Literature DB >> 18056294

Metagenomics: a call for bringing a new science into the classroom (while it's still new).

Anne Jurkowski1, Ann H Reid, Jay B Labov.   

Abstract

Mesh:

Year:  2007        PMID: 18056294      PMCID: PMC2104496          DOI: 10.1187/cbe.07-09-0075

Source DB:  PubMed          Journal:  CBE Life Sci Educ        ISSN: 1931-7913            Impact factor:   3.325


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  10 in total

1.  Combined genetic and physical map of the complex genome of Agrobacterium tumefaciens.

Authors:  B W Goodner; B P Markelz; M C Flanagan; C B Crowell; J L Racette; B A Schilling; L M Halfon; J S Mellors; G Grabowski
Journal:  J Bacteriol       Date:  1999-09       Impact factor: 3.490

2.  Education. Scientific teaching.

Authors:  Jo Handelsman; Diane Ebert-May; Robert Beichner; Peter Bruns; Amy Chang; Robert DeHaan; Jim Gentile; Sarah Lauffer; James Stewart; Shirley M Tilghman; William B Wood
Journal:  Science       Date:  2004-04-23       Impact factor: 47.728

3.  From the National Academies: the challenges and opportunities for improving undergraduate science education through introductory courses.

Authors:  Jay B Labov
Journal:  Cell Biol Educ       Date:  2004

4.  Metagenomics. Ocean study yields a tidal wave of microbial DNA.

Authors:  John Bohannon
Journal:  Science       Date:  2007-03-16       Impact factor: 47.728

5.  Genome Consortium for Active Teaching: meeting the goals of BIO2010.

Authors:  A Malcolm Campbell; Mary Lee S Ledbetter; Laura L M Hoopes; Todd T Eckdahl; Laurie J Heyer; Anne Rosenwald; Edison Fowlks; Scott Tonidandel; Brooke Bucholtz; Gail Gottfried
Journal:  CBE Life Sci Educ       Date:  2007       Impact factor: 3.325

6.  Collaborative programs. Genome Consortium for Active Teaching (GCAT).

Authors:  A Malcolm Campbell; Todd T Eckdahl; Edison Fowlks; Laurie J Heyer; Laura L Mays Hoopes; Mary Lee Ledbetter; Anne G Rosenwald
Journal:  Science       Date:  2006-02-24       Impact factor: 47.728

7.  Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58.

Authors:  B Goodner; G Hinkle; S Gattung; N Miller; M Blanchard; B Qurollo; B S Goldman; Y Cao; M Askenazi; C Halling; L Mullin; K Houmiel; J Gordon; M Vaudin; O Iartchouk; A Epp; F Liu; C Wollam; M Allinger; D Doughty; C Scott; C Lappas; B Markelz; C Flanagan; C Crowell; J Gurson; C Lomo; C Sear; G Strub; C Cielo; S Slater
Journal:  Science       Date:  2001-12-14       Impact factor: 47.728

8.  Metagenomic analysis of the human distal gut microbiome.

Authors:  Steven R Gill; Mihai Pop; Robert T Deboy; Paul B Eckburg; Peter J Turnbaugh; Buck S Samuel; Jeffrey I Gordon; David A Relman; Claire M Fraser-Liggett; Karen E Nelson
Journal:  Science       Date:  2006-06-02       Impact factor: 47.728

9.  Comparison of dot chromosome sequences from D. melanogaster and D. virilis reveals an enrichment of DNA transposon sequences in heterochromatic domains.

Authors:  Elizabeth E Slawson; Christopher D Shaffer; Colin D Malone; Wilson Leung; Elmer Kellmann; Rachel B Shevchek; Carolyn A Craig; Seth M Bloom; James Bogenpohl; James Dee; Emiko T A Morimoto; Jenny Myoung; Andrew S Nett; Fatih Ozsolak; Mindy E Tittiger; Andrea Zeug; Mary-Lou Pardue; Jeremy Buhler; Elaine R Mardis; Sarah C R Elgin
Journal:  Genome Biol       Date:  2006-02-20       Impact factor: 13.583

10.  Exploring the mycobacteriophage metaproteome: phage genomics as an educational platform.

Authors:  Graham F Hatfull; Marisa L Pedulla; Deborah Jacobs-Sera; Pauline M Cichon; Amy Foley; Michael E Ford; Rebecca M Gonda; Jennifer M Houtz; Andrew J Hryckowian; Vanessa A Kelchner; Swathi Namburi; Kostandin V Pajcini; Mark G Popovich; Donald T Schleicher; Brian Z Simanek; Alexis L Smith; Gina M Zdanowicz; Vanaja Kumar; Craig L Peebles; William R Jacobs; Jeffrey G Lawrence; Roger W Hendrix
Journal:  PLoS Genet       Date:  2006-06-09       Impact factor: 5.917

  10 in total
  20 in total

1.  Integrating policy and decision making into undergraduate science education.

Authors:  Jay B Labov; Nancy F Huddleston
Journal:  CBE Life Sci Educ       Date:  2008       Impact factor: 3.325

2.  Summer workshop in metagenomics: one week plus eight students equals gigabases of cloned DNA.

Authors:  Carlos Rios-Velazquez; Lynn L Williamson; Karen A Cloud-Hansen; Heather K Allen; Mathew D McMahon; Zakee L Sabree; Justin J Donato; Jo Handelsman
Journal:  J Microbiol Biol Educ       Date:  2011-12-01

3.  Integrated biology and undergraduate science education: a new biology education for the twenty-first century?

Authors:  Jay B Labov; Ann H Reid; Keith R Yamamoto
Journal:  CBE Life Sci Educ       Date:  2010       Impact factor: 3.325

4.  A model for using a concept inventory as a tool for students' assessment and faculty professional development.

Authors:  Gili Marbach-Ad; Katherine C McAdams; Spencer Benson; Volker Briken; Laura Cathcart; Michael Chase; Najib M El-Sayed; Kenneth Frauwirth; Brenda Fredericksen; Sam W Joseph; Vincent Lee; Kevin S McIver; David Mosser; B Booth Quimby; Patricia Shields; Wenxia Song; Daniel C Stein; Richard Stewart; Katerina V Thompson; Ann C Smith
Journal:  CBE Life Sci Educ       Date:  2010       Impact factor: 3.325

5.  MetaSee: an interactive and extendable visualization toolbox for metagenomic sample analysis and comparison.

Authors:  Baoxing Song; Xiaoquan Su; Jian Xu; Kang Ning
Journal:  PLoS One       Date:  2012-11-08       Impact factor: 3.240

Review 6.  Metagenomics: A new horizon in cancer research.

Authors:  Joyita Banerjee; Neetu Mishra; Yogita Dhas
Journal:  Meta Gene       Date:  2015-06-14

7.  Exploring metagenomics in the laboratory of an introductory biology course.

Authors:  Brian B Gibbens; Cheryl L Scott; Courtney D Hoff; Janet L Schottel
Journal:  J Microbiol Biol Educ       Date:  2015-05-01

8.  Parallel-META: efficient metagenomic data analysis based on high-performance computation.

Authors:  Xiaoquan Su; Jian Xu; Kang Ning
Journal:  BMC Syst Biol       Date:  2012-07-16

9.  Metagenome annotation using a distributed grid of undergraduate students.

Authors:  Pascal Hingamp; Céline Brochier; Emmanuel Talla; Daniel Gautheret; Denis Thieffry; Carl Herrmann
Journal:  PLoS Biol       Date:  2008-11-25       Impact factor: 8.029

10.  MetaBoot: a machine learning framework of taxonomical biomarker discovery for different microbial communities based on metagenomic data.

Authors:  Xiaojun Wang; Xiaoquan Su; Xinping Cui; Kang Ning
Journal:  PeerJ       Date:  2015-07-07       Impact factor: 2.984

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