Literature DB >> 10464183

Combined genetic and physical map of the complex genome of Agrobacterium tumefaciens.

B W Goodner1, B P Markelz, M C Flanagan, C B Crowell, J L Racette, B A Schilling, L M Halfon, J S Mellors, G Grabowski.   

Abstract

A combined genetic and physical map of the Agrobacterium tumefaciens A348 (derivative of C58) genome was constructed to address the discrepancy between initial single-chromosome genetic maps and more recent physical mapping data supporting the presence of two nonhomologous chromosomes. The combined map confirms the two-chromosome genomic structure and the correspondence of the initial genetic maps to the circular chromosome. The linear chromosome is almost devoid of auxotrophic markers, which probably explains why it was missed by genetic mapping studies.

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Year:  1999        PMID： 10464183      PMCID： PMC94018     

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  52 in total

1.  The complete genome sequence of the gastric pathogen Helicobacter pylori.

Authors:  J F Tomb; O White; A R Kerlavage; R A Clayton; G G Sutton; R D Fleischmann; K A Ketchum; H P Klenk; S Gill; B A Dougherty; K Nelson; J Quackenbush; L Zhou; E F Kirkness; S Peterson; B Loftus; D Richardson; R Dodson; H G Khalak; A Glodek; K McKenney; L M Fitzegerald; N Lee; M D Adams; E K Hickey; D E Berg; J D Gocayne; T R Utterback; J D Peterson; J M Kelley; M D Cotton; J M Weidman; C Fujii; C Bowman; L Watthey; E Wallin; W S Hayes; M Borodovsky; P D Karp; H O Smith; C M Fraser; J C Venter
Journal:  Nature       Date:  1997-08-07       Impact factor: 49.962

2.  Mini-Tn5 transposon derivatives for insertion mutagenesis, promoter probing, and chromosomal insertion of cloned DNA in gram-negative eubacteria.

Authors:  V de Lorenzo; M Herrero; U Jakubzik; K N Timmis
Journal:  J Bacteriol       Date:  1990-11       Impact factor: 3.490

Review 3.  Pathogenicity islands and the evolution of bacterial pathogens.

Authors:  C A Lee
Journal:  Infect Agents Dis       Date:  1996-01

4.  The complete genome sequence of Escherichia coli K-12.

Authors:  F R Blattner; G Plunkett; C A Bloch; N T Perna; V Burland; M Riley; J Collado-Vides; J D Glasner; C K Rode; G F Mayhew; J Gregor; N W Davis; H A Kirkpatrick; M A Goeden; D J Rose; B Mau; Y Shao
Journal:  Science       Date:  1997-09-05       Impact factor: 47.728

5.  Unconventional genomic organization in the alpha subgroup of the Proteobacteria.

Authors:  E Jumas-Bilak; S Michaux-Charachon; G Bourg; M Ramuz; A Allardet-Servent
Journal:  J Bacteriol       Date:  1998-05       Impact factor: 3.490

6.  Characterization of three Agrobacterium tumefaciens avirulent mutants with chromosomal mutations that affect induction of vir genes.

Authors:  J Metts; J West; S H Doares; A G Matthysse
Journal:  J Bacteriol       Date:  1991-02       Impact factor: 3.490

7.  Chromosome mobilization by the R plasmid R68.45: a tool in Pseudomonas genetics.

Authors:  D Haas; B W Holloway
Journal:  Mol Gen Genet       Date:  1978-01-17

8.  Mutation of the miaA gene of Agrobacterium tumefaciens results in reduced vir gene expression.

Authors:  J Gray; J Wang; S B Gelvin
Journal:  J Bacteriol       Date:  1992-02       Impact factor: 3.490

9.  Broad host range DNA cloning system for gram-negative bacteria: construction of a gene bank of Rhizobium meliloti.

Authors:  G Ditta; S Stanfield; D Corbin; D R Helinski
Journal:  Proc Natl Acad Sci U S A       Date:  1980-12       Impact factor: 11.205

10.  Multiple chromosomes in bacteria: structure and function of chromosome II of Rhodobacter sphaeroides 2.4.1T.

Authors:  M Choudhary; C Mackenzie; K S Nereng; E Sodergren; G M Weinstock; S Kaplan
Journal:  J Bacteriol       Date:  1994-12       Impact factor: 3.490
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  10 in total

1.  Positive selection for mutations affecting bioconversion of aromatic compounds in Agrobacterium tumefaciens: analysis of spontaneous mutations in the protocatechuate 3,4-dioxygenase gene.

Authors:  D Parke
Journal:  J Bacteriol       Date:  2000-11       Impact factor: 3.490

2.  Structural and functional analysis of a putative gene cluster for palatinose transport on the linear chromosome of Agrobacterium tumefaciens MAFF301001.

Authors:  Devika M De Costa; Katsunori Suzuki; Kazuo Yoshida
Journal:  J Bacteriol       Date:  2003-04       Impact factor: 3.490

3.  The chloramphenicol-inducible catB gene in Agrobacterium tumefaciens is regulated by translation attenuation.

Authors:  Elizabeth J Rogers; M Sayeedur Rahman; Russell T Hill; Paul S Lovett
Journal:  J Bacteriol       Date:  2002-08       Impact factor: 3.490

4.  The CcrM DNA methyltransferase of Agrobacterium tumefaciens is essential, and its activity is cell cycle regulated.

Authors:  L S Kahng; L Shapiro
Journal:  J Bacteriol       Date:  2001-05       Impact factor: 3.490

5.  Metagenomics: a call for bringing a new science into the classroom (while it's still new).

Authors:  Anne Jurkowski; Ann H Reid; Jay B Labov
Journal:  CBE Life Sci Educ       Date:  2007       Impact factor: 3.325

6.  The effect of chromosome geometry on genetic diversity.

Authors:  Pradeep Reddy Marri; Leigh K Harris; Kathryn Houmiel; Steven C Slater; Howard Ochman
Journal:  Genetics       Date:  2008-05       Impact factor: 4.562

Review 7.  Agrobacterium-mediated plant transformation: the biology behind the "gene-jockeying" tool.

Authors:  Stanton B Gelvin
Journal:  Microbiol Mol Biol Rev       Date:  2003-03       Impact factor: 11.056

8.  Reconciliation of sequence data and updated annotation of the genome of Agrobacterium tumefaciens C58, and distribution of a linear chromosome in the genus Agrobacterium.

Authors:  Steven Slater; João C Setubal; Brad Goodner; Kathryn Houmiel; Jian Sun; Rajinder Kaul; Barry S Goldman; Stephen K Farrand; Nalvo Almeida; Thomas Burr; Eugene Nester; David M Rhoads; Ryosuke Kadoi; Trucian Ostheimer; Nicole Pride; Allison Sabo; Erin Henry; Erin Telepak; Lindsey Cromes; Alana Harkleroad; Louis Oliphant; Phil Pratt-Szegila; Roy Welch; Derek Wood
Journal:  Appl Environ Microbiol       Date:  2012-12-14       Impact factor: 4.792

9.  Comparative genomics of Streptomyces avermitilis, Streptomyces cattleya, Streptomyces maritimus and Kitasatospora aureofaciens using a Streptomyces coelicolor microarray system.

Authors:  Nai-Hua Hsiao; Ralph Kirby
Journal:  Antonie Van Leeuwenhoek       Date:  2007-06-21       Impact factor: 2.271

10.  Large deletions in the pAtC58 megaplasmid of Agrobacterium tumefaciens can confer reduced carriage cost and increased expression of virulence genes.

Authors:  Elise R Morton; Peter M Merritt; James D Bever; Clay Fuqua
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416
  10 in total

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