Literature DB >> 23990199

Selectively dispersed isotope labeling for protein structure determination by magic angle spinning NMR.

Matthew T Eddy1, Marina Belenky, Astrid C Sivertsen, Robert G Griffin, Judith Herzfeld.   

Abstract

The power of nuclear magnetic resonance spectroscopy derives from its site-specific access to chemical, structural and dynamic information. However, the corresponding multiplicity of interactions can be difficult to tease apart. Complimentary approaches involve spectral editing on the one hand and selective isotope substitution on the other. Here we present a new "redox" approach to the latter: acetate is chosen as the sole carbon source for the extreme oxidation numbers of its two carbons. Consistent with conventional anabolic pathways for the amino acids, [1-(13)C] acetate does not label α carbons, labels other aliphatic carbons and the aromatic carbons very selectively, and labels the carboxyl carbons heavily. The benefits of this labeling scheme are exemplified by magic angle spinning spectra of microcrystalline immunoglobulin binding protein G (GB1): the elimination of most J-couplings and one- and two-bond dipolar couplings provides narrow signals and long-range, intra- and inter-residue, recoupling essential for distance constraints. Inverse redox labeling, from [2-(13)C] acetate, is also expected to be useful: although it retains one-bond couplings in the sidechains, the removal of CA-CO coupling in the backbone should improve the resolution of NCACX spectra.

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Year:  2013        PMID: 23990199      PMCID: PMC3793012          DOI: 10.1007/s10858-013-9773-3

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  36 in total

1.  Secondary structure, dynamics, and topology of a seven-helix receptor in native membranes, studied by solid-state NMR spectroscopy.

Authors:  Manuel Etzkorn; Swetlana Martell; Ovidiu C Andronesi; Karsten Seidel; Martin Engelhard; Marc Baldus
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

2.  [2,3-(13)C]-labeling of aromatic residues--getting a head start in the magic-angle-spinning NMR assignment of membrane proteins.

Authors:  Matthias Hiller; Victoria A Higman; Stefan Jehle; Barth-Jan van Rossum; Werner Kühlbrandt; Hartmut Oschkinat
Journal:  J Am Chem Soc       Date:  2007-12-20       Impact factor: 15.419

3.  Radio frequency-driven recoupling at high magic-angle spinning frequencies: homonuclear recoupling sans heteronuclear decoupling.

Authors:  Marvin J Bayro; Ramesh Ramachandran; Marc A Caporini; Matthew T Eddy; Robert G Griffin
Journal:  J Chem Phys       Date:  2008-02-07       Impact factor: 3.488

4.  Magic-angle spinning solid-state NMR spectroscopy of the beta1 immunoglobulin binding domain of protein G (GB1): 15N and 13C chemical shift assignments and conformational analysis.

Authors:  W Trent Franks; Donghua H Zhou; Benjamin J Wylie; Brian G Money; Daniel T Graesser; Heather L Frericks; Gurmukh Sahota; Chad M Rienstra
Journal:  J Am Chem Soc       Date:  2005-09-07       Impact factor: 15.419

5.  Temperature dependence of protein backbone motion from carbonyl 13C and amide 15N NMR relaxation.

Authors:  Shou-Lin Chang; Nico Tjandra
Journal:  J Magn Reson       Date:  2005-05       Impact factor: 2.229

6.  Assignment of congested NMR spectra: carbonyl backbone enrichment via the Entner-Doudoroff pathway.

Authors:  Amir Goldbourt; Loren A Day; Ann E McDermott
Journal:  J Magn Reson       Date:  2007-08-17       Impact factor: 2.229

7.  Backbone conformational constraints in a microcrystalline U-15N-labeled protein by 3D dipolar-shift solid-state NMR spectroscopy.

Authors:  W Trent Franks; Benjamin J Wylie; Sara A Stellfox; Chad M Rienstra
Journal:  J Am Chem Soc       Date:  2006-03-15       Impact factor: 15.419

8.  Three-dimensional solid-state NMR study of a seven-helical integral membrane proton pump--structural insights.

Authors:  Lichi Shi; Mumdooh A M Ahmed; Wurong Zhang; Gregg Whited; Leonid S Brown; Vladimir Ladizhansky
Journal:  J Mol Biol       Date:  2009-03-06       Impact factor: 5.469

9.  Crystal polymorphism of protein GB1 examined by solid-state NMR spectroscopy and X-ray diffraction.

Authors:  Heather L Frericks Schmidt; Lindsay J Sperling; Yi Gui Gao; Benjamin J Wylie; John M Boettcher; Scott R Wilson; Chad M Rienstra
Journal:  J Phys Chem B       Date:  2007-12-04       Impact factor: 2.991

10.  Fractional 13C enrichment of isolated carbons using [1-13C]- or [2- 13C]-glucose facilitates the accurate measurement of dynamics at backbone Calpha and side-chain methyl positions in proteins.

Authors:  Patrik Lundström; Kaare Teilum; Tommy Carstensen; Irina Bezsonova; Silke Wiesner; D Flemming Hansen; Tomasz L Religa; Mikael Akke; Lewis E Kay
Journal:  J Biomol NMR       Date:  2007-06-07       Impact factor: 2.582

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  8 in total

1.  Solid state NMR chemical shift assignment and conformational analysis of a cellulose binding protein facilitated by optimized glycerol enrichment.

Authors:  Hadar Ivanir; Amir Goldbourt
Journal:  J Biomol NMR       Date:  2014-05-14       Impact factor: 2.835

2.  Proton-Assisted Recoupling (PAR) in Peptides and Proteins.

Authors:  Kevin J Donovan; Sheetal K Jain; Robert Silvers; Sara Linse; Robert G Griffin
Journal:  J Phys Chem B       Date:  2017-11-27       Impact factor: 2.991

3.  Aggregation and Fibril Structure of AβM01-42 and Aβ1-42.

Authors:  Robert Silvers; Michael T Colvin; Kendra K Frederick; Angela C Jacavone; Susan Lindquist; Sara Linse; Robert G Griffin
Journal:  Biochemistry       Date:  2017-08-30       Impact factor: 3.162

4.  Peptide and Protein Dynamics and Low-Temperature/DNP Magic Angle Spinning NMR.

Authors:  Qing Zhe Ni; Evgeny Markhasin; Thach V Can; Björn Corzilius; Kong Ooi Tan; Alexander B Barnes; Eugenio Daviso; Yongchao Su; Judith Herzfeld; Robert G Griffin
Journal:  J Phys Chem B       Date:  2017-05-10       Impact factor: 2.991

Review 5.  Modern Technologies of Solution Nuclear Magnetic Resonance Spectroscopy for Three-dimensional Structure Determination of Proteins Open Avenues for Life Scientists.

Authors:  Toshihiko Sugiki; Naohiro Kobayashi; Toshimichi Fujiwara
Journal:  Comput Struct Biotechnol J       Date:  2017-04-13       Impact factor: 7.271

Review 6.  Current NMR Techniques for Structure-Based Drug Discovery.

Authors:  Toshihiko Sugiki; Kyoko Furuita; Toshimichi Fujiwara; Chojiro Kojima
Journal:  Molecules       Date:  2018-01-12       Impact factor: 4.411

7.  Modest Offset Difference Internuclear Selective Transfer via Homonuclear Dipolar Coupling.

Authors:  Evgeny Nimerovsky; Eszter E Najbauer; Kumar Tekwani Movellan; Kai Xue; Stefan Becker; Loren B Andreas
Journal:  J Phys Chem Lett       Date:  2022-02-08       Impact factor: 6.475

8.  Site-selective 13C labeling of histidine and tryptophan using ribose.

Authors:  Ulrich Weininger
Journal:  J Biomol NMR       Date:  2017-08-30       Impact factor: 2.835

  8 in total

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