Literature DB >> 16645815

Band-selective 13C homonuclear 3D spectroscopy for solid proteins at high field with rotor-synchronized soft pulses.

Donghua H Zhou1, Kathryn D Kloepper, Kem A Winter, Chad M Rienstra.   

Abstract

We demonstrate improved 3D 13C-13C-13C chemical shift correlation experiments for solid proteins, utilizing band-selective coherence transfer, scalar decoupling and homonuclear zero-quantum polarization transfer. Judicious use of selective pulses and a z-filter period suppress artifacts with a two-step phase cycle, allowing higher digital resolution in a fixed measurement time. The novel correlation of C(ali)-C(ali)-CX (C(ali) for aliphatic carbons, CX for any carbon) reduces measurement time by an order of magnitude without sacrificing digital resolution. The experiment retains intensity from side-chain carbon resonances whose chemical shift dispersion is critical to minimize spectral degeneracy for large proteins with a predominance of secondary structure, such as beta-sheet rich fibrillar proteins and alpha-helical membrane proteins. We demonstrate the experiment for the beta1 immunoglobulin binding domain of protein G (GB1) and fibrils of the A30P mutant of alpha-synuclein, which is implicated in Parkinson's disease. Selective pulses of duration comparable the rotor period give optimal performance, but must be synchronized with the spinning in non-trivial ways to minimize chemical shift anisotropy recoupling effects. Soft pulses with a small bandwidth-duration product are best for exciting the approximately 70 ppm bandwidth required for aliphatic-only dimensions.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16645815     DOI: 10.1007/s10858-006-0026-6

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  26 in total

1.  Resolution enhancement in multidimensional solid-state NMR spectroscopy of proteins using spin-state selection.

Authors:  Luminita Duma; Sabine Hediger; Bernhard Brutscher; Anja Böckmann; Lyndon Emsley
Journal:  J Am Chem Soc       Date:  2003-10-01       Impact factor: 15.419

2.  Protein structure determination by high-resolution solid-state NMR spectroscopy: application to microcrystalline ubiquitin.

Authors:  Stephan G Zech; A Joshua Wand; Ann E McDermott
Journal:  J Am Chem Soc       Date:  2005-06-22       Impact factor: 15.419

3.  Spin diffusion in resolved solid-state NMR spectra.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1985-11-01

4.  1H, 13C and 15N chemical shift assignments of the N-terminal PAS domain of mNPAS2.

Authors:  T C Holdeman; K H Gardner
Journal:  J Biomol NMR       Date:  2001-12       Impact factor: 2.835

5.  Resonance assignment of 13C/15N labeled solid proteins by two- and three-dimensional magic-angle-spinning NMR.

Authors:  M Hong
Journal:  J Biomol NMR       Date:  1999-09       Impact factor: 2.835

6.  Short selective pulses for biochemical applications.

Authors:  E Kupce; J Boyd; I D Campbell
Journal:  J Magn Reson B       Date:  1995-03

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  Improvement of resolution in solid state NMR spectra with J-decoupling: an analysis of lineshape contributions in uniformly 13C-enriched amino acids and proteins.

Authors:  Tatyana I Igumenova; Ann E McDermott
Journal:  J Magn Reson       Date:  2003-10       Impact factor: 2.229

9.  Supramolecular structure in full-length Alzheimer's beta-amyloid fibrils: evidence for a parallel beta-sheet organization from solid-state nuclear magnetic resonance.

Authors:  John J Balbach; Aneta T Petkova; Nathan A Oyler; Oleg N Antzutkin; David J Gordon; Stephen C Meredith; Robert Tycko
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

Review 10.  The synucleins: a family of proteins involved in synaptic function, plasticity, neurodegeneration and disease.

Authors:  D F Clayton; J M George
Journal:  Trends Neurosci       Date:  1998-06       Impact factor: 13.837

View more
  10 in total

1.  Magic-angle spinning solid-state NMR of a 144 kDa membrane protein complex: E. coli cytochrome bo3 oxidase.

Authors:  Heather L Frericks; Donghua H Zhou; Lai Lai Yap; Robert B Gennis; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2006-09-09       Impact factor: 2.835

2.  Resolution enhancement by homonuclear J-decoupling: application to three-dimensional solid-state magic angle spinning NMR spectroscopy.

Authors:  Lichi Shi; Xiaohu Peng; Mumdooh A M Ahmed; Dale Edwards; Leonid S Brown; Vladimir Ladizhansky
Journal:  J Biomol NMR       Date:  2008-04-11       Impact factor: 2.835

3.  Frequency-selective heteronuclear dephasing and selective carbonyl labeling to deconvolute crowded spectra of membrane proteins by magic angle spinning NMR.

Authors:  Nathaniel J Traaseth; Gianluigi Veglia
Journal:  J Magn Reson       Date:  2011-03-17       Impact factor: 2.229

4.  3D (13)C-(13)C-(13)C correlation NMR for de novo distance determination of solid proteins and application to a human alpha-defensin.

Authors:  Shenhui Li; Yuan Zhang; Mei Hong
Journal:  J Magn Reson       Date:  2009-11-18       Impact factor: 2.229

5.  Temperature-dependent sensitivity enhancement of solid-state NMR spectra of alpha-synuclein fibrils.

Authors:  Kathryn D Kloepper; Donghua H Zhou; Ying Li; Kem A Winter; Julia M George; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2007-11       Impact factor: 2.835

6.  Solid-state NMR analysis of membrane proteins and protein aggregates by proton detected spectroscopy.

Authors:  Donghua H Zhou; Andrew J Nieuwkoop; Deborah A Berthold; Gemma Comellas; Lindsay J Sperling; Ming Tang; Gautam J Shah; Elliott J Brea; Luisel R Lemkau; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2012-09-18       Impact factor: 2.835

7.  J-Based 3D sidechain correlation in solid-state proteins.

Authors:  Ye Tian; Lingling Chen; Dimitri Niks; J Michael Kaiser; Jinfeng Lai; Chad M Rienstra; Michael F Dunn; Leonard J Mueller
Journal:  Phys Chem Chem Phys       Date:  2009-07-20       Impact factor: 3.676

8.  Pre-fibrillar alpha-synuclein variants with impaired beta-structure increase neurotoxicity in Parkinson's disease models.

Authors:  Damla Pinar Karpinar; Madhu Babu Gajula Balija; Sebastian Kügler; Felipe Opazo; Nasrollah Rezaei-Ghaleh; Nora Wender; Hai-Young Kim; Grit Taschenberger; Björn H Falkenburger; Henrike Heise; Ashutosh Kumar; Dietmar Riedel; Lars Fichtner; Aaron Voigt; Gerhard H Braus; Karin Giller; Stefan Becker; Alf Herzig; Marc Baldus; Herbert Jäckle; Stefan Eimer; Jörg B Schulz; Christian Griesinger; Markus Zweckstetter
Journal:  EMBO J       Date:  2009-09-10       Impact factor: 11.598

9.  Crystal polymorphism of protein GB1 examined by solid-state NMR spectroscopy and X-ray diffraction.

Authors:  Heather L Frericks Schmidt; Lindsay J Sperling; Yi Gui Gao; Benjamin J Wylie; John M Boettcher; Scott R Wilson; Chad M Rienstra
Journal:  J Phys Chem B       Date:  2007-12-04       Impact factor: 2.991

10.  Water Accessibility Refinement of the Extended Structure of KirBac1.1 in the Closed State.

Authors:  Reza Amani; Charles D Schwieters; Collin G Borcik; Isaac R Eason; Ruixian Han; Benjamin D Harding; Benjamin J Wylie
Journal:  Front Mol Biosci       Date:  2021-11-30
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.