Literature DB >> 19565580

Targeted 13C-13C distance measurements in a microcrystalline protein via J-decoupled rotational resonance width measurements.

Patrick C A van der Wel1, Matthew T Eddy, Ramesh Ramachandran, Robert G Griffin.   

Abstract

Rotational resonance width (R(2)W) magic-angle spinning (MAS) NMR experiments are performed to measure (13)C-(13)C distances in the hydrophobic core of the microcrystalline model protein G(Beta1). Such inter-residue distances are of particular value in NMR structure determinations. The experiments are done at a Larmor frequency of 750 MHz (1)H where the contribution of (13)C chemical shift anisotropy (CSA) to the R(2) transfer mechanism is significant. To minimize line broadening in the 2D spectra, we employ a combination of even/odd isotopic labeling with [1,3-(13)C] glycerol, and J-decoupling in the indirect dimension. This results in high-precision distance measurements between aromatic side chains of three tyrosine residues and distant methyl groups in the hydrophobic core of the protein. Even in the absence of information on the relative orientation of the shift tensors, we obtain relatively high precision data, which can be further improved by additional constraints on the tensor orientations.

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Year:  2009        PMID: 19565580      PMCID: PMC4440578          DOI: 10.1002/cphc.200900102

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  31 in total

Review 1.  Magnetic resonance in the solid state: applications to protein folding, amyloid fibrils and membrane proteins.

Authors:  Marc Baldus
Journal:  Eur Biophys J       Date:  2007-05-31       Impact factor: 1.733

2.  Multipole-multimode Floquet theory of rotational resonance width experiments: 13C-13C distance measurements in uniformly labeled solids.

Authors:  Ramesh Ramachandran; Józef R Lewandowski; Patrick C A van der Wel; Robert G Griffin
Journal:  J Chem Phys       Date:  2006-06-07       Impact factor: 3.488

3.  A thermodynamic scale for the beta-sheet forming tendencies of the amino acids.

Authors:  C K Smith; J M Withka; L Regan
Journal:  Biochemistry       Date:  1994-05-10       Impact factor: 3.162

4.  Two crystal structures of the B1 immunoglobulin-binding domain of streptococcal protein G and comparison with NMR.

Authors:  T Gallagher; P Alexander; P Bryan; G L Gilliland
Journal:  Biochemistry       Date:  1994-04-19       Impact factor: 3.162

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

6.  Determination of helix-helix interactions in membranes by rotational resonance NMR.

Authors:  S O Smith; B J Bormann
Journal:  Proc Natl Acad Sci U S A       Date:  1995-01-17       Impact factor: 11.205

7.  Dipole tensor-based atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR.

Authors:  W Trent Franks; Benjamin J Wylie; Heather L Frericks Schmidt; Andrew J Nieuwkoop; Rebecca-Maria Mayrhofer; Gautam J Shah; Daniel T Graesser; Chad M Rienstra
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-14       Impact factor: 11.205

8.  13C-13C rotational resonance width distance measurements in uniformly 13C-labeled peptides.

Authors:  Ramesh Ramachandran; Vladimir Ladizhansky; Vikram S Bajaj; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2003-12-17       Impact factor: 15.419

9.  Verification of the C-terminal intramolecular beta-sheet in Abeta42 aggregates using solid-state NMR: implications for potent neurotoxicity through the formation of radicals.

Authors:  Yuichi Masuda; Satoko Uemura; Azusa Nakanishi; Ryutaro Ohashi; K Takegoshi; Takahiko Shimizu; Takuji Shirasawa; Kazuhiro Irie
Journal:  Bioorg Med Chem Lett       Date:  2008-04-26       Impact factor: 2.823

10.  Crystal polymorphism of protein GB1 examined by solid-state NMR spectroscopy and X-ray diffraction.

Authors:  Heather L Frericks Schmidt; Lindsay J Sperling; Yi Gui Gao; Benjamin J Wylie; John M Boettcher; Scott R Wilson; Chad M Rienstra
Journal:  J Phys Chem B       Date:  2007-12-04       Impact factor: 2.991

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  5 in total

1.  Structural characterization of GNNQQNY amyloid fibrils by magic angle spinning NMR.

Authors:  Patrick C A van der Wel; Józef R Lewandowski; Robert G Griffin
Journal:  Biochemistry       Date:  2010-11-09       Impact factor: 3.162

2.  High-resolution solid-state NMR structure of alanyl-prolyl-glycine.

Authors:  Alexander B Barnes; Loren B Andreas; Matthias Huber; Ramesh Ramachandran; Patrick C A van der Wel; Mikhail Veshtort; Robert G Griffin; Manish A Mehta
Journal:  J Magn Reson       Date:  2009-06-13       Impact factor: 2.229

3.  Spinning-rate encoded chemical shift correlations from rotational resonance solid-state NMR experiments.

Authors:  Jun Li; Patrick C A van der Wel
Journal:  J Magn Reson       Date:  2013-02-14       Impact factor: 2.229

4.  Modular, triple-resonance, transmission line DNP MAS probe for 500 MHz/330 GHz.

Authors:  Marcel Reese; Christy George; Chen Yang; Sudheer Jawla; J Tassilo Grün; Harald Schwalbe; Christina Redfield; Richard J Temkin; Robert G Griffin
Journal:  J Magn Reson       Date:  2019-08-14       Impact factor: 2.229

Review 5.  Dihedral Angle Measurements for Structure Determination by Biomolecular Solid-State NMR Spectroscopy.

Authors:  Patrick C A van der Wel
Journal:  Front Mol Biosci       Date:  2021-12-06
  5 in total

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