Literature DB >> 18001703

Modeling the bicoid gradient: diffusion and reversible nuclear trapping of a stable protein.

Mathieu Coppey1, Alexander M Berezhkovskii, Yoosik Kim, Alistair N Boettiger, Stanislav Y Shvartsman.   

Abstract

The Bicoid gradient in the Drosophila embryo provided the first example of a morphogen gradient studied at the molecular level. The exponential shape of the Bicoid gradient had always been interpreted within the framework of the localized production, diffusion, and degradation model. We propose an alternative mechanism, which assumes no Bicoid degradation. The medium where the Bicoid gradient is formed and interpreted is very dynamic. Most notably, the number of nuclei changes over three orders of magnitude from fertilization, when Bicoid synthesis is initiated, to nuclear cycle 14 when most of the measurements were taken. We demonstrate that a model based on Bicoid diffusion and nucleocytoplasmic shuttling in the presence of the growing number of nuclei can account for most of the properties of the Bicoid concentration profile. Consistent with experimental observations, the Bicoid gradient in our model is established before nuclei migrate to the periphery of the embryo and remains stable during subsequent nuclear divisions.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 18001703      PMCID: PMC2789574          DOI: 10.1016/j.ydbio.2007.09.058

Source DB:  PubMed          Journal:  Dev Biol        ISSN: 0012-1606            Impact factor:   3.582


  29 in total

Review 1.  Morphogen transport along epithelia, an integrated trafficking problem.

Authors:  Jean-Paul Vincent; Laurence Dubois
Journal:  Dev Cell       Date:  2002-11       Impact factor: 12.270

2.  The role of binding site cluster strength in Bicoid-dependent patterning in Drosophila.

Authors:  Amanda Ochoa-Espinosa; Gozde Yucel; Leah Kaplan; Adam Pare; Noel Pura; Adam Oberstein; Dmitri Papatsenko; Stephen Small
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-25       Impact factor: 11.205

3.  Diffusion-trapping model of receptor trafficking in dendrites.

Authors:  P C Bressloff; B A Earnshaw
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-04-26

Review 4.  Drosophila development: homeodomains and translational control.

Authors:  P D Zamore; R Lehmann
Journal:  Curr Biol       Date:  1996-07-01       Impact factor: 10.834

5.  Determination of spatial domains of zygotic gene expression in the Drosophila embryo by the affinity of binding sites for the bicoid morphogen.

Authors:  W Driever; G Thoma; C Nüsslein-Volhard
Journal:  Nature       Date:  1989-08-03       Impact factor: 49.962

6.  The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner.

Authors:  W Driever; C Nüsslein-Volhard
Journal:  Cell       Date:  1988-07-01       Impact factor: 41.582

7.  Known maternal gradients are not sufficient for the establishment of gap domains in Drosophila melanogaster.

Authors:  Johannes Jaeger; David H Sharp; John Reinitz
Journal:  Mech Dev       Date:  2006-11-14       Impact factor: 1.882

8.  Dual roles for patched in sequestering and transducing Hedgehog.

Authors:  Y Chen; G Struhl
Journal:  Cell       Date:  1996-11-01       Impact factor: 41.582

Review 9.  Seeing is believing: the bicoid morphogen gradient matures.

Authors:  Anne Ephrussi; Daniel St Johnston
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

10.  Fundamental limits to position determination by concentration gradients.

Authors:  Filipe Tostevin; Pieter Rein ten Wolde; Martin Howard
Journal:  PLoS Comput Biol       Date:  2007-03-19       Impact factor: 4.475

View more
  45 in total

1.  The Bicoid gradient is shaped independently of nuclei.

Authors:  Oliver Grimm; Eric Wieschaus
Journal:  Development       Date:  2010-09-01       Impact factor: 6.868

2.  Multiscale modeling of diffusion in the early Drosophila embryo.

Authors:  Christine Sample; Stanislav Y Shvartsman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-17       Impact factor: 11.205

Review 3.  Modelling the Bicoid gradient.

Authors:  Oliver Grimm; Mathieu Coppey; Eric Wieschaus
Journal:  Development       Date:  2010-07       Impact factor: 6.868

4.  Determining the scale of the Bicoid morphogen gradient.

Authors:  Inbal Hecht; Wouter-Jan Rappel; Herbert Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-03       Impact factor: 11.205

5.  Analysis of dynamic morphogen scale invariance.

Authors:  David M Umulis
Journal:  J R Soc Interface       Date:  2009-03-11       Impact factor: 4.118

Review 6.  Mechanisms of scaling in pattern formation.

Authors:  David M Umulis; Hans G Othmer
Journal:  Development       Date:  2013-12       Impact factor: 6.868

7.  Secreted, receptor-associated bone morphogenetic protein regulators reduce stochastic noise intrinsic to many extracellular morphogen distributions.

Authors:  Mohammad Shahriar Karim; Gregery T Buzzard; David M Umulis
Journal:  J R Soc Interface       Date:  2011-10-19       Impact factor: 4.118

Review 8.  Morphogen gradient formation.

Authors:  Ortrud Wartlick; Anna Kicheva; Marcos González-Gaitán
Journal:  Cold Spring Harb Perspect Biol       Date:  2009-09       Impact factor: 10.005

Review 9.  Quantitative approaches in developmental biology.

Authors:  Andrew C Oates; Nicole Gorfinkiel; Marcos González-Gaitán; Carl-Philipp Heisenberg
Journal:  Nat Rev Genet       Date:  2009-08       Impact factor: 53.242

10.  Nucleocytoplasmic transport: a thermodynamic mechanism.

Authors:  Ronen Benjamine Kopito; Michael Elbaum
Journal:  HFSP J       Date:  2009-03-18
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.