Literature DB >> 19584811

Quantitative approaches in developmental biology.

Andrew C Oates1, Nicole Gorfinkiel, Marcos González-Gaitán, Carl-Philipp Heisenberg.   

Abstract

The tissues of a developing embryo are simultaneously patterned, moved and differentiated according to an exchange of information between their constituent cells. We argue that these complex self-organizing phenomena can only be fully understood with quantitative mathematical frameworks that allow specific hypotheses to be formulated and tested. The quantitative and dynamic imaging of growing embryos at the molecular, cellular and tissue level is the key experimental advance required to achieve this interaction between theory and experiment. Here we describe how mathematical modelling has become an invaluable method to integrate quantitative biological information across temporal and spatial scales, serving to connect the activity of regulatory molecules with the morphological development of organisms.

Mesh:

Year:  2009        PMID: 19584811     DOI: 10.1038/nrg2548

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  122 in total

1.  Linking a genetic defect to its cellular phenotype in a cardiac arrhythmia.

Authors:  C E Clancy; Y Rudy
Journal:  Nature       Date:  1999-08-05       Impact factor: 49.962

2.  Measurements of mechanical properties of the blastula wall reveal which hypothesized mechanisms of primary invagination are physically plausible in the sea urchin Strongylocentrotus purpuratus.

Authors:  L A Davidson; G F Oster; R E Keller; M A Koehl
Journal:  Dev Biol       Date:  1999-05-15       Impact factor: 3.582

3.  Shaping the zebrafish notochord.

Authors:  Nathalia S Glickman; Charles B Kimmel; Martha A Jones; Richard J Adams
Journal:  Development       Date:  2003-03       Impact factor: 6.868

4.  Oscillatory expression of Hes1, p53, and NF-kappaB driven by transcriptional time delays.

Authors:  Nicholas A M Monk
Journal:  Curr Biol       Date:  2003-08-19       Impact factor: 10.834

5.  Mechanical induction of Twist in the Drosophila foregut/stomodeal primordium.

Authors:  Emmanuel Farge
Journal:  Curr Biol       Date:  2003-08-19       Impact factor: 10.834

6.  A computational tensegrity model predicts dynamic rheological behaviors in living cells.

Authors:  Cornel Sultan; Dimitrije Stamenović; Donald E Ingber
Journal:  Ann Biomed Eng       Date:  2004-04       Impact factor: 3.934

Review 7.  Biology by numbers: mathematical modelling in developmental biology.

Authors:  Claire J Tomlin; Jeffrey D Axelrod
Journal:  Nat Rev Genet       Date:  2007-05       Impact factor: 53.242

8.  Physical modeling of cell geometric order in an epithelial tissue.

Authors:  Sascha Hilgenfeldt; Sinem Erisken; Richard W Carthew
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-11       Impact factor: 11.205

9.  Mechanical control of global cell behaviour during dorsal closure in Drosophila.

Authors:  Nicole Gorfinkiel; Guy B Blanchard; Richard J Adams; Alfonso Martinez Arias
Journal:  Development       Date:  2009-04-29       Impact factor: 6.868

10.  The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner.

Authors:  W Driever; C Nüsslein-Volhard
Journal:  Cell       Date:  1988-07-01       Impact factor: 41.582

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  48 in total

Review 1.  Modeling bistable cell-fate choices in the Drosophila eye: qualitative and quantitative perspectives.

Authors:  Thomas G W Graham; S M Ali Tabei; Aaron R Dinner; Ilaria Rebay
Journal:  Development       Date:  2010-07       Impact factor: 6.868

2.  Putting together rather than taking apart.

Authors:  János Szabad
Journal:  EMBO Rep       Date:  2010-11-19       Impact factor: 8.807

Review 3.  Boundary formation and maintenance in tissue development.

Authors:  Christian Dahmann; Andrew C Oates; Michael Brand
Journal:  Nat Rev Genet       Date:  2011-01       Impact factor: 53.242

Review 4.  Physical control of tissue morphogenesis across scales.

Authors:  Georgina A Stooke-Vaughan; Otger Campàs
Journal:  Curr Opin Genet Dev       Date:  2018-11-01       Impact factor: 5.578

Review 5.  Non-genetic heterogeneity of cells in development: more than just noise.

Authors:  Sui Huang
Journal:  Development       Date:  2009-12       Impact factor: 6.868

6.  Uncovering the behaviors of individual cells within a multicellular microvascular community.

Authors:  Hesam Parsa; Ranjan Upadhyay; Samuel K Sia
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-07       Impact factor: 11.205

7.  Comparison and calibration of different reporters for quantitative analysis of gene expression.

Authors:  Hernan G Garcia; Heun Jin Lee; James Q Boedicker; Rob Phillips
Journal:  Biophys J       Date:  2011-08-03       Impact factor: 4.033

8.  Is cell polarity under mechanical control in plants?

Authors:  Olivier Hamant; Elliot M Meyerowitz; Jan Traas
Journal:  Plant Signal Behav       Date:  2011-01-01

9.  Limbs made to measure.

Authors:  Anna Kicheva; James Briscoe
Journal:  PLoS Biol       Date:  2010-07-13       Impact factor: 8.029

10.  Building a morphogen gradient without diffusion in a growing tissue.

Authors:  Rebecca H Chisholm; Barry D Hughes; Kerry A Landman
Journal:  PLoS One       Date:  2010-09-30       Impact factor: 3.240

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