Literature DB >> 22012974

Secreted, receptor-associated bone morphogenetic protein regulators reduce stochastic noise intrinsic to many extracellular morphogen distributions.

Mohammad Shahriar Karim1, Gregery T Buzzard, David M Umulis.   

Abstract

Morphogens are secreted molecules that specify cell-fate organization in developing tissues. Patterns of gene expression or signalling immediately downstream of many morphogens such as the bone morphogenetic protein (BMP) decapentaplegic (Dpp) are highly reproducible and robust to perturbations. This contrasts starkly with our expectation of a noisy interpretation that would arise out of the experimentally determined low concentration (approximately picomolar) range of Dpp activity, tight receptor binding and very slow kinetic rates. To investigate mechanisms by which the intrinsic noise can be attenuated in Dpp signalling, we focus on a class of secreted proteins that bind to Dpp in the extracellular environment and play an active role in regulating Dpp/receptor interactions. We developed a stochastic model of Dpp signalling in Drosophila melanogaster and used the model to quantify the extent that stochastic fluctuations would lead to errors in spatial patterning and extended the model to investigate how a surface-associated BMP-binding protein (SBP) such as Crossveinless-2 (Cv-2) may buffer out signalling noise. In the presence of SBPs, fluctuations in the level of ligand-bound receptor can be reduced by more than twofold depending on parameter values for the intermediate transition states. Regulation of receptor-ligand interactions by SBPs may also increase the frequency of stochastic fluctuations providing a separation of timescales between high-frequency receptor equilibration and slower morphogen patterning. High-frequency noise generated by SBP regulation is easily attenuated by the intracellular network creating a system that imitates the performance of a simple low-pass filter common in audio and communication applications. Together, these data indicate that one of the benefits of receptor-ligand regulation by secreted non-receptors may be greater reliability of morphogen patterning mechanisms.

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Year:  2011        PMID: 22012974      PMCID: PMC3306646          DOI: 10.1098/rsif.2011.0547

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  34 in total

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Authors:  J B Gurdon; P Y Bourillot
Journal:  Nature       Date:  2001-10-25       Impact factor: 49.962

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Authors:  Malte Paulsen; Stefan Legewie; Roland Eils; Emil Karaulanov; Christof Niehrs
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-01       Impact factor: 11.205

3.  Do morphogen gradients arise by diffusion?

Authors:  Arthur D Lander; Qing Nie; Frederic Y M Wan
Journal:  Dev Cell       Date:  2002-06       Impact factor: 12.270

Review 4.  Molecular recognition in bone morphogenetic protein (BMP)/receptor interaction.

Authors:  Walter Sebald; Joachim Nickel; Jin-Li Zhang; Thomas D Mueller
Journal:  Biol Chem       Date:  2004-08       Impact factor: 3.915

5.  The interpretation of position in a morphogen gradient as revealed by occupancy of activin receptors.

Authors:  S Dyson; J B Gurdon
Journal:  Cell       Date:  1998-05-15       Impact factor: 41.582

6.  Mechanisms for positional signalling by morphogen transport: a theoretical study.

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Journal:  J Theor Biol       Date:  1998-03-07       Impact factor: 2.691

Review 7.  Morphogens and pattern formation.

Authors:  C Neumann; S Cohen
Journal:  Bioessays       Date:  1997-08       Impact factor: 4.345

8.  Identification of the ligand-binding site of the BMP type IA receptor for BMP-4.

Authors:  T Hatta; H Konishi; E Katoh; T Natsume; N Ueno; Y Kobayashi; T Yamazaki
Journal:  Biopolymers       Date:  2000       Impact factor: 2.505

9.  BMP-2 antagonists emerge from alterations in the low-affinity binding epitope for receptor BMPR-II.

Authors:  T Kirsch; J Nickel; W Sebald
Journal:  EMBO J       Date:  2000-07-03       Impact factor: 11.598

10.  Physical properties of Tld, Sog, Tsg and Dpp protein interactions are predicted to help create a sharp boundary in Bmp signals during dorsoventral patterning of the Drosophila embryo.

Authors:  Osamu Shimmi; Michael B O'Connor
Journal:  Development       Date:  2003-10       Impact factor: 6.868

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  7 in total

1.  Semi-adaptive response and noise attenuation in bone morphogenetic protein signalling.

Authors:  Tian Hong; Ernest S Fung; Lei Zhang; Grace Huynh; Edwin S Monuki; Qing Nie
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Authors:  Kristi A Wharton; Mihaela Serpe
Journal:  Curr Opin Genet Dev       Date:  2013-06-02       Impact factor: 5.578

3.  The role of mathematical models in understanding pattern formation in developmental biology.

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4.  lolal Is an Evolutionarily New Epigenetic Regulator of dpp Transcription during Dorsal-Ventral Axis Formation.

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Journal:  Mol Biol Evol       Date:  2016-07-08       Impact factor: 16.240

Review 5.  Diversity and robustness of bone morphogenetic protein pattern formation.

Authors:  Aasakiran Madamanchi; Mary C Mullins; David M Umulis
Journal:  Development       Date:  2021-04-06       Impact factor: 6.868

6.  Heterodimer-heterotetramer formation mediates enhanced sensor activity in a biophysical model for BMP signaling.

Authors:  Md Shahriar Karim; Aasakiran Madamanchi; James A Dutko; Mary C Mullins; David M Umulis
Journal:  PLoS Comput Biol       Date:  2021-09-30       Impact factor: 4.475

7.  Efficient calculation of steady state probability distribution for stochastic biochemical reaction network.

Authors:  Shahriar Karim; Gregery T Buzzard; David M Umulis
Journal:  BMC Genomics       Date:  2012-10-26       Impact factor: 3.969

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