Literature DB >> 19834216

Sampling and visualizing creases with scale-space particles.

Gordon L Kindlmann1, Raúl San José Estépar, Stephen M Smith, Carl-Fredrik Westin.   

Abstract

Particle systems have gained importance as a methodology for sampling implicit surfaces and segmented objects to improve mesh generation and shape analysis. We propose that particle systems have a significantly more general role in sampling structure from unsegmented data. We describe a particle system that computes samplings of crease features (i.e. ridges and valleys, as lines or surfaces) that effectively represent many anatomical structures in scanned medical data. Because structure naturally exists at a range of sizes relative to the image resolution, computer vision has developed the theory of scale-space, which considers an n-D image as an (n+1)-D stack of images at different blurring levels. Our scale-space particles move through continuous four-dimensional scale-space according to spatial constraints imposed by the crease features, a particle-image energy that draws particles towards scales of maximal feature strength, and an inter-particle energy that controls sampling density in space and scale. To make scale-space practical for large three-dimensional data, we present a spline-based interpolation across scale from a small number of pre-computed blurrings at optimally selected scales. The configuration of the particle system is visualized with tensor glyphs that display information about the local Hessian of the image, and the scale of the particle. We use scale-space particles to sample the complex three-dimensional branching structure of airways in lung CT, and the major white matter structures in brain DTI.

Entities:  

Mesh:

Year:  2009        PMID: 19834216      PMCID: PMC2891996          DOI: 10.1109/TVCG.2009.177

Source DB:  PubMed          Journal:  IEEE Trans Vis Comput Graph        ISSN: 1077-2626            Impact factor:   4.579


  27 in total

1.  Initialization, noise, singularities, and scale in height ridge traversal for tubular object centerline extraction.

Authors:  Stephen R Aylward; Elizabeth Bullitt
Journal:  IEEE Trans Med Imaging       Date:  2002-02       Impact factor: 10.048

Review 2.  Processing and visualization for diffusion tensor MRI.

Authors:  C-F Westin; S E Maier; H Mamata; A Nabavi; F A Jolesz; R Kikinis
Journal:  Med Image Anal       Date:  2002-06       Impact factor: 8.545

3.  CPM: a deformable model for shape recovery and segmentation based on charged particles.

Authors:  Andrei C Jalba; Michael H F Wilkinson; Jos B T M Roerdink
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2004-10       Impact factor: 6.226

4.  Log-Euclidean metrics for fast and simple calculus on diffusion tensors.

Authors:  Vincent Arsigny; Pierre Fillard; Xavier Pennec; Nicholas Ayache
Journal:  Magn Reson Med       Date:  2006-08       Impact factor: 4.668

5.  Snakes, shapes, and gradient vector flow.

Authors:  C Xu; J L Prince
Journal:  IEEE Trans Image Process       Date:  1998       Impact factor: 10.856

6.  Surface extraction from multi-field particle volume data using multi-dimensional cluster visualization.

Authors:  Lars Linsen; Tran Van Long; Paul Rosenthal; Stephan Rosswog
Journal:  IEEE Trans Vis Comput Graph       Date:  2008 Nov-Dec       Impact factor: 4.579

7.  Delineating white matter structure in diffusion tensor MRI with anisotropy creases.

Authors:  Gordon Kindlmann; Xavier Tricoche; Carl-Fredrik Westin
Journal:  Med Image Anal       Date:  2007-08-03       Impact factor: 8.545

8.  Toward a quantitative assessment of diffusion anisotropy.

Authors:  C Pierpaoli; P J Basser
Journal:  Magn Reson Med       Date:  1996-12       Impact factor: 4.668

Review 9.  A review of diffusion tensor imaging studies in schizophrenia.

Authors:  Marek Kubicki; Robert McCarley; Carl-Fredrik Westin; Hae-Jeong Park; Stephan Maier; Ron Kikinis; Ferenc A Jolesz; Martha E Shenton
Journal:  J Psychiatr Res       Date:  2005-07-14       Impact factor: 4.791

10.  Tract-based morphometry for white matter group analysis.

Authors:  Lauren J O'Donnell; Carl-Fredrik Westin; Alexandra J Golby
Journal:  Neuroimage       Date:  2008-12-25       Impact factor: 6.556

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  25 in total

1.  Automatic lung lobe segmentation using particles, thin plate splines, and maximum a posteriori estimation.

Authors:  James C Ross; Rail San José Estépar; Gordon Kindlmann; Alejandro Díaz; Carl-Fredrik Westin; Edwin K Silverman; George R Washko
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

2.  Arterial and Venous Pulmonary Vascular Morphology and Their Relationship to Findings in Cardiac Magnetic Resonance Imaging in Smokers.

Authors:  Farbod N Rahaghi; J Michael Wells; Carolyn E Come; Isaac A De La Bruere; Surya P Bhatt; James C Ross; Gonzalo Vegas-Sánchez-Ferrero; Alejandro A Diaz; Jasleen Minhas; Mark T Dransfield; Raúl San José Estépar; George R Washko
Journal:  J Comput Assist Tomogr       Date:  2016 Nov/Dec       Impact factor: 1.826

3.  Computed tomographic measures of pulmonary vascular morphology in smokers and their clinical implications.

Authors:  Raúl San José Estépar; Gregory L Kinney; Jennifer L Black-Shinn; Russell P Bowler; Gordon L Kindlmann; James C Ross; Ron Kikinis; Meilan K Han; Carolyn E Come; Alejandro A Diaz; Michael H Cho; Craig P Hersh; Joyce D Schroeder; John J Reilly; David A Lynch; James D Crapo; J Michael Wells; Mark T Dransfield; John E Hokanson; George R Washko
Journal:  Am J Respir Crit Care Med       Date:  2013-07-15       Impact factor: 21.405

4.  Helicity conservation by flow across scales in reconnecting vortex links and knots.

Authors:  Martin W Scheeler; Dustin Kleckner; Davide Proment; Gordon L Kindlmann; William T M Irvine
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-17       Impact factor: 11.205

5.  Peripheral bronchial identification on chest CT using unsupervised machine learning.

Authors:  Daniel A Moses; Laughlin Dawes; Claude Sammut; Tatjana Zrimec
Journal:  Int J Comput Assist Radiol Surg       Date:  2018-06-13       Impact factor: 2.924

6.  Bronchial Cartilage Assessment with Model-Based GAN Regressor.

Authors:  Pietro Nardelli; George R Washko; Raúl San José Estépar
Journal:  Med Image Comput Comput Assist Interv       Date:  2019-10-10

7.  DIFFEOMORPHIC POINT SET REGISTRATION USING NON-STATIONARY MIXTURE MODELS.

Authors:  D Wassermann; J Ross; G Washko; C-F Westin; R San José Estépar
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2013

8.  Pulmonary lobe segmentation based on ridge surface sampling and shape model fitting.

Authors:  James C Ross; Gordon L Kindlmann; Yuka Okajima; Hiroto Hatabu; Alejandro A Díaz; Edwin K Silverman; George R Washko; Jennifer Dy; Raúl San José Estépar
Journal:  Med Phys       Date:  2013-12       Impact factor: 4.071

9.  Generative-based airway and vessel morphology quantification on chest CT images.

Authors:  Pietro Nardelli; James C Ross; Raúl San José Estépar
Journal:  Med Image Anal       Date:  2020-03-28       Impact factor: 8.545

10.  MODELING AIRWAY PROBABILITY.

Authors:  Rina D Rudyanto; Arrate Muñoz-Barrutia; Alejandro A Diaz; James Ross; George R Washko; Carlos Ortiz-de-Solorzano; Raul San Jose Estepar
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2013
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