Literature DB >> 18234810

The stochastic dynamics of filopodial growth.

Yueheng Lan1, Garegin A Papoian.   

Abstract

A filopodium is a cytoplasmic projection, exquisitely built and regulated, which extends from the leading edge of the migrating cell, exploring the cell's neighborhood. Commonly, filopodia grow and retract after their initiation, exhibiting rich dynamical behaviors. We model the growth of a filopodium based on a stochastic description which incorporates mechanical, physical, and biochemical components. Our model provides a full stochastic treatment of the actin monomer diffusion and polymerization of each individual actin filament under stress of the fluctuating membrane. We investigated the length distribution of individual filaments in a growing filopodium and studied how it depends on various physical parameters. The distribution of filament lengths turned out to be narrow, which we explained by the negative feedback created by the membrane load and monomeric G-actin gradient. We also discovered that filopodial growth is strongly diminished upon increasing retrograde flow, suggesting that regulating the retrograde flow rate would be a highly efficient way to control filopodial extension dynamics. The filopodial length increases as the membrane fluctuations decrease, which we attributed to the unequal loading of the membrane force among individual filaments, which, in turn, results in larger average polymerization rates. We also observed significant diffusional noise of G-actin monomers, which leads to smaller G-actin flux along the filopodial tube compared with the prediction using the diffusion equation. Overall, partial cancellation of these two fluctuation effects allows a simple mean field model to rationalize most of our simulation results. However, fast fluctuations significantly renormalize the mean field model parameters. The biological significance of our filopodial model and avenues for future development are also discussed.

Mesh:

Substances:

Year:  2008        PMID: 18234810      PMCID: PMC2367176          DOI: 10.1529/biophysj.107.123778

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  93 in total

1.  Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations.

Authors:  T B Kepler; T C Elston
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

3.  Cytoskeleton confinement and tension of red blood cell membranes.

Authors:  N Gov; A G Zilman; S Safran
Journal:  Phys Rev Lett       Date:  2003-06-04       Impact factor: 9.161

Review 4.  Tissue cells feel and respond to the stiffness of their substrate.

Authors:  Dennis E Discher; Paul Janmey; Yu-Li Wang
Journal:  Science       Date:  2005-11-18       Impact factor: 47.728

5.  Delay-induced stochastic oscillations in gene regulation.

Authors:  Dmitri Bratsun; Dmitri Volfson; Lev S Tsimring; Jeff Hasty
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

6.  Absolute rate theories of epigenetic stability.

Authors:  Aleksandra M Walczak; José N Onuchic; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-16       Impact factor: 11.205

Review 7.  On the edge: modeling protrusion.

Authors:  Alex Mogilner
Journal:  Curr Opin Cell Biol       Date:  2005-11-28       Impact factor: 8.382

8.  Dynamical control of the shape and size of stereocilia and microvilli.

Authors:  Jacques Prost; Camilla Barbetta; Jean-François Joanny
Journal:  Biophys J       Date:  2007-05-25       Impact factor: 4.033

9.  Computer-assisted analysis of filopod formation and the role of myosin II heavy chain phosphorylation in Dictyostelium.

Authors:  Paul J Heid; Jeremy Geiger; Deborah Wessels; Edward Voss; David R Soll
Journal:  J Cell Sci       Date:  2005-04-26       Impact factor: 5.285

10.  Actions of cytochalasins on the organization of actin filaments and microtubules in a neuronal growth cone.

Authors:  P Forscher; S J Smith
Journal:  J Cell Biol       Date:  1988-10       Impact factor: 10.539

View more
  38 in total

1.  Membrane tension, myosin force, and actin turnover maintain actin treadmill in the nerve growth cone.

Authors:  Erin M Craig; David Van Goor; Paul Forscher; Alex Mogilner
Journal:  Biophys J       Date:  2012-04-03       Impact factor: 4.033

2.  Protein fluxes along the filopodium as a framework for understanding the growth-retraction dynamics: the interplay between diffusion and active transport.

Authors:  Pavel I Zhuravlev; Garegin A Papoian
Journal:  Cell Adh Migr       Date:  2011 Sep-Oct       Impact factor: 3.405

3.  Theory of active transport in filopodia and stereocilia.

Authors:  Pavel I Zhuravlev; Yueheng Lan; Maria S Minakova; Garegin A Papoian
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-18       Impact factor: 11.205

4.  Design of active transport must be highly intricate: a possible role of myosin and Ena/VASP for G-actin transport in filopodia.

Authors:  Pavel I Zhuravlev; Bryan S Der; Garegin A Papoian
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

5.  Mechano-chemical feedbacks regulate actin mesh growth in lamellipodial protrusions.

Authors:  Longhua Hu; Garegin A Papoian
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

6.  Effect of capping protein on a growing filopodium.

Authors:  D R Daniels
Journal:  Biophys J       Date:  2010-04-07       Impact factor: 4.033

7.  Modeling the formation of in vitro filopodia.

Authors:  K-C Lee; A Gopinathan; J M Schwarz
Journal:  J Math Biol       Date:  2010-10-19       Impact factor: 2.259

8.  Dynamics of presynaptic protein recruitment induced by local presentation of artificial adhesive contacts.

Authors:  Fernando Suarez; Peter Thostrup; David Colman; Peter Grutter
Journal:  Dev Neurobiol       Date:  2012-09-27       Impact factor: 3.964

9.  The role of the Arp2/3 complex in shaping the dynamics and structures of branched actomyosin networks.

Authors:  James Liman; Carlos Bueno; Yossi Eliaz; Nicholas P Schafer; M Neal Waxham; Peter G Wolynes; Herbert Levine; Margaret S Cheung
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-30       Impact factor: 11.205

10.  Load sharing in the growth of bundled biopolymers.

Authors:  Ruizhe Wang; A E Carlsson
Journal:  New J Phys       Date:  2014-11-01       Impact factor: 3.729

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.