Literature DB >> 17470803

OLE RNA, an RNA motif that is highly conserved in several extremophilic bacteria, is a substrate for and can be regulated by RNase P RNA.

Jae-hyeong Ko1, Sidney Altman.   

Abstract

OLE (ornate, large, and extremophilic) RNA is a noncoding RNA that is found in several extremophilic bacteria, including Bacillus halodurans. The function of OLE RNA has not been clarified. In this study, we found that RNase P cleaves OLE RNA and that the cleavage leads to a small reduction of expression of a downstream gene determined by analyses in vitro and in vivo. Under RNase P-deficient conditions, the amount of OLE RNA increased. Our results imply that RNase P could play a role in the regulation of gene expression in relation to conserved RNA motifs like OLE RNA as well as in riboswitches and operons.

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Year:  2007        PMID: 17470803      PMCID: PMC1876530          DOI: 10.1073/pnas.0701715104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

1.  A specific endoribonuclease, RNase P, affects gene expression of polycistronic operon mRNAs.

Authors:  Yong Li; Sidney Altman
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-29       Impact factor: 11.205

Review 2.  Regulation of bacterial gene expression by riboswitches.

Authors:  Wade C Winkler; Ronald R Breaker
Journal:  Annu Rev Microbiol       Date:  2005       Impact factor: 15.500

3.  Identification of a large noncoding RNA in extremophilic eubacteria.

Authors:  Elena Puerta-Fernandez; Jeffrey E Barrick; Adam Roth; Ronald R Breaker
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-12       Impact factor: 11.205

Review 4.  Gene control by large noncoding RNAs.

Authors:  Ilya Shamovsky; Evgeny Nudler
Journal:  Sci STKE       Date:  2006-10-03

5.  Type A and B RNase P RNAs are interchangeable in vivo despite substantial biophysical differences.

Authors:  Barbara Wegscheid; Ciarán Condon; Roland K Hartmann
Journal:  EMBO Rep       Date:  2006-02-10       Impact factor: 8.807

6.  Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis.

Authors:  H Takami; K Nakasone; Y Takaki; G Maeno; R Sasaki; N Masui; F Fuji; C Hirama; Y Nakamura; N Ogasawara; S Kuhara; K Horikoshi
Journal:  Nucleic Acids Res       Date:  2000-11-01       Impact factor: 16.971

7.  Protein activation of a ribozyme: the role of bacterial RNase P protein.

Authors:  Amy H Buck; Andrew B Dalby; Alexander W Poole; Alexei V Kazantsev; Norman R Pace
Journal:  EMBO J       Date:  2005-09-15       Impact factor: 11.598

8.  Plasmids for ectopic integration in Bacillus subtilis.

Authors:  A M Guérout-Fleury; N Frandsen; P Stragier
Journal:  Gene       Date:  1996-11-21       Impact factor: 3.688

9.  Artificial regulation of gene expression in Escherichia coli by RNase P.

Authors:  C Guerrier-Takada; Y Li; S Altman
Journal:  Proc Natl Acad Sci U S A       Date:  1995-11-21       Impact factor: 11.205

10.  RNase P cleaves transient structures in some riboswitches.

Authors:  Sidney Altman; Donna Wesolowski; Cecilia Guerrier-Takada; Yong Li
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-01       Impact factor: 11.205

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  15 in total

Review 1.  Of proteins and RNA: the RNase P/MRP family.

Authors:  Olga Esakova; Andrey S Krasilnikov
Journal:  RNA       Date:  2010-07-13       Impact factor: 4.942

2.  Tailoring the switch from IRES-dependent to 5'-end-dependent translation with the RNase P ribozyme.

Authors:  Noemi Fernández; Encarnación Martínez-Salas
Journal:  RNA       Date:  2010-03-01       Impact factor: 4.942

3.  Inactivation of expression of two genes in Saccharomyces cerevisiae with the external guide sequence methodology.

Authors:  Xudong Cheng; Jae-Hyeong Ko; Sidney Altman
Journal:  RNA       Date:  2011-01-13       Impact factor: 4.942

Review 4.  External guide sequence technology: a path to development of novel antimicrobial therapeutics.

Authors:  Carol Davies-Sala; Alfonso Soler-Bistué; Robert A Bonomo; Angeles Zorreguieta; Marcelo E Tolmasky
Journal:  Ann N Y Acad Sci       Date:  2015-04-09       Impact factor: 5.691

5.  A second RNA-binding protein is essential for ethanol tolerance provided by the bacterial OLE ribonucleoprotein complex.

Authors:  Kimberly A Harris; Zhiyuan Zhou; Michelle L Peters; Sarah G Wilkins; Ronald R Breaker
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-18       Impact factor: 11.205

6.  Inhibition of expression of virulence genes of Yersinia pestis in Escherichia coli by external guide sequences and RNase P.

Authors:  Jae-hyeong Ko; Mina Izadjoo; Sidney Altman
Journal:  RNA       Date:  2008-06-20       Impact factor: 4.942

7.  Alternative substrate kinetics of Escherichia coli ribonuclease P: determination of relative rate constants by internal competition.

Authors:  Lindsay E Yandek; Hsuan-Chun Lin; Michael E Harris
Journal:  J Biol Chem       Date:  2013-01-28       Impact factor: 5.157

8.  Inactivation of expression of several genes in a variety of bacterial species by EGS technology.

Authors:  Ning Shen; Jae-hyeong Ko; Gaoping Xiao; Donna Wesolowski; Ge Shan; Bruce Geller; Mina Izadjoo; Sidney Altman
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-30       Impact factor: 11.205

9.  OLE RNA protects extremophilic bacteria from alcohol toxicity.

Authors:  Jason G Wallace; Zhiyuan Zhou; Ronald R Breaker
Journal:  Nucleic Acids Res       Date:  2012-05-04       Impact factor: 16.971

10.  Inhibition of expression in Escherichia coli of a virulence regulator MglB of Francisella tularensis using external guide sequence technology.

Authors:  Gaoping Xiao; Eirik W Lundblad; Mina Izadjoo; Sidney Altman
Journal:  PLoS One       Date:  2008-11-13       Impact factor: 3.240

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