Literature DB >> 25866265

External guide sequence technology: a path to development of novel antimicrobial therapeutics.

Carol Davies-Sala1,2, Alfonso Soler-Bistué1,2, Robert A Bonomo3, Angeles Zorreguieta1, Marcelo E Tolmasky2.   

Abstract

RNase P is a ribozyme originally identified for its role in maturation of tRNAs by cleavage of precursor tRNAs (pre-tRNAs) at the 5'-end termini. RNase P is a ribonucleoprotein consisting of a catalytic RNA molecule and, depending on the organism, one or more cofactor proteins. The site of cleavage of a pre-tRNA is identified by its tertiary structure; and any RNA molecule can be cleaved by RNase P as long as the RNA forms a duplex that resembles the regional structure in the pre-tRNA. When the antisense sequence that forms the duplex with the strand that is subsequently cleaved by RNase P is in a separate molecule, it is called an external guide sequence (EGS). These fundamental observations are the basis for EGS technology, which consists of inhibiting gene expression by utilizing an EGS that elicits RNase P-mediated cleavage of a target mRNA molecule. EGS technology has been used to inhibit expression of a wide variety of genes, and may help development of novel treatments of diseases, including multidrug-resistant bacterial and viral infections.
© 2015 New York Academy of Sciences.

Entities:  

Keywords:  RNase P; antimicrobials; antisense; drug design; external guide sequence

Mesh:

Substances:

Year:  2015        PMID: 25866265      PMCID: PMC4600001          DOI: 10.1111/nyas.12755

Source DB:  PubMed          Journal:  Ann N Y Acad Sci        ISSN: 0077-8923            Impact factor:   5.691


  104 in total

Review 1.  RNase P: variations and uses.

Authors:  Venkat Gopalan; Agustin Vioque; Sidney Altman
Journal:  J Biol Chem       Date:  2001-12-10       Impact factor: 5.157

2.  Cleavage of an inaccessible site by the maxizyme with two independent binding arms: an alternative approach to the recruitment of RNA helicases.

Authors:  Tomoko Kuwabara; Masaki Warashina; Kazunari Taira
Journal:  J Biochem       Date:  2002-07       Impact factor: 3.387

3.  A role for the catalytic ribonucleoprotein RNase P in RNA polymerase III transcription.

Authors:  Robert Reiner; Yitzhak Ben-Asouli; Ilana Krilovetzky; Nayef Jarrous
Journal:  Genes Dev       Date:  2006-06-15       Impact factor: 11.361

4.  Phenotypic conversion of drug-resistant bacteria to drug sensitivity.

Authors:  C Guerrier-Takada; R Salavati; S Altman
Journal:  Proc Natl Acad Sci U S A       Date:  1997-08-05       Impact factor: 11.205

5.  In vivo and in vitro structural analysis of the rplJ mRNA leader of Escherichia coli. Protection by bound L10-L7/L12.

Authors:  S C Climie; J D Friesen
Journal:  J Biol Chem       Date:  1988-10-15       Impact factor: 5.157

6.  Inactivation of expression of two genes in Saccharomyces cerevisiae with the external guide sequence methodology.

Authors:  Xudong Cheng; Jae-Hyeong Ko; Sidney Altman
Journal:  RNA       Date:  2011-01-13       Impact factor: 4.942

7.  Plasmid-Mediated Antibiotic Resistance and Virulence in Gram-negatives: the Klebsiella pneumoniae Paradigm.

Authors:  Maria S Ramirez; German M Traglia; David L Lin; Tung Tran; Marcelo E Tolmasky
Journal:  Microbiol Spectr       Date:  2014

Review 8.  Archaeal/eukaryal RNase P: subunits, functions and RNA diversification.

Authors:  Nayef Jarrous; Venkat Gopalan
Journal:  Nucleic Acids Res       Date:  2010-08-16       Impact factor: 16.971

9.  Rise and dissemination of aminoglycoside resistance: the aac(6')-Ib paradigm.

Authors:  María S Ramirez; Nikolas Nikolaidis; Marcelo E Tolmasky
Journal:  Front Microbiol       Date:  2013-05-17       Impact factor: 5.640

10.  Internalization of Locked Nucleic Acids/DNA Hybrid Oligomers into Escherichia coli.

Authors:  German M Traglia; Carol Davies Sala; Juan I Fuxman Bass; Alfonso J C Soler-Bistué; Angeles Zorreguieta; María Soledad Ramírez; Marcelo E Tolmasky
Journal:  Biores Open Access       Date:  2012-10
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  11 in total

Review 1.  Advances in therapeutic bacterial antisense biotechnology.

Authors:  John P Hegarty; David B Stewart
Journal:  Appl Microbiol Biotechnol       Date:  2017-12-05       Impact factor: 4.813

2.  Inhibition of AAC(6')-Ib-mediated resistance to amikacin in Acinetobacter baumannii by an antisense peptide-conjugated 2',4'-bridged nucleic acid-NC-DNA hybrid oligomer.

Authors:  Christina Lopez; Brock A Arivett; Luis A Actis; Marcelo E Tolmasky
Journal:  Antimicrob Agents Chemother       Date:  2015-07-13       Impact factor: 5.191

3.  Synthetic riboswitches for the analysis of tRNA processing by eukaryotic RNase P enzymes.

Authors:  Anna Ender; Nadine Grafl; Tim Kolberg; Sven Findeiß; Peter F Stadler; Mario Mörl
Journal:  RNA       Date:  2022-01-12       Impact factor: 4.942

4.  Assessment of configurations and chemistries of bridged nucleic acids-containing oligomers as external guide sequences: a methodology for inhibition of expression of antibiotic resistance genes.

Authors:  Alexis Jackson; Saumya Jani; Carol Davies Sala; Alfonso J C Soler-Bistué; Angeles Zorreguieta; Marcelo E Tolmasky
Journal:  Biol Methods Protoc       Date:  2016-03-01

Review 5.  Amikacin: Uses, Resistance, and Prospects for Inhibition.

Authors:  Maria S Ramirez; Marcelo E Tolmasky
Journal:  Molecules       Date:  2017-12-19       Impact factor: 4.411

6.  Restoration of susceptibility to amikacin by 8-hydroxyquinoline analogs complexed to zinc.

Authors:  Jesus Magallon; Kevin Chiem; Tung Tran; Maria S Ramirez; Veronica Jimenez; Marcelo E Tolmasky
Journal:  PLoS One       Date:  2019-05-29       Impact factor: 3.240

Review 7.  Insights Into Non-coding RNAs as Novel Antimicrobial Drugs.

Authors:  Gisela Parmeciano Di Noto; María Carolina Molina; Cecilia Quiroga
Journal:  Front Genet       Date:  2019-02-22       Impact factor: 4.599

8.  Rational Design of an Orthogonal Pair of Bimolecular RNase P Ribozymes through Heterologous Assembly of Their Modular Domains.

Authors:  Yuri Nozawa; Megumi Hagihara; Md Sohanur Rahman; Shigeyoshi Matsumura; Yoshiya Ikawa
Journal:  Biology (Basel)       Date:  2019-08-31

9.  Identification of the Acinetobacter baumannii Ribonuclease P Catalytic Subunit: Cleavage of a Target mRNA in the Presence of an External Guide Sequence.

Authors:  Carol Davies-Sala; Saumya Jani; Angeles Zorreguieta; Marcelo E Tolmasky
Journal:  Front Microbiol       Date:  2018-10-08       Impact factor: 5.640

Review 10.  Bright and Early: Inhibiting Human Cytomegalovirus by Targeting Major Immediate-Early Gene Expression or Protein Function.

Authors:  Catherine S Adamson; Michael M Nevels
Journal:  Viruses       Date:  2020-01-16       Impact factor: 5.048

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