Literature DB >> 16470227

Type A and B RNase P RNAs are interchangeable in vivo despite substantial biophysical differences.

Barbara Wegscheid1, Ciarán Condon, Roland K Hartmann.   

Abstract

We show that structural type A and B bacterial ribonuclease P (RNase P) RNAs can fully replace each other in vivo despite the many reported differences in their biogenesis, biochemical/biophysical properties and enzyme function in vitro. Our findings suggest that many of the reported idiosyncrasies of type A and B enzymes either do not reflect the in vivo situation or are not crucial for RNase P function in vivo, at least under standard growth conditions. The discrimination of mature tRNA by RNase P, so far thought to prevent product inhibition of the enzyme in the presence of a large cellular excess of mature tRNA relative to the precursor form, is apparently not crucial for RNase P function in vivo.

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Year:  2006        PMID: 16470227      PMCID: PMC1456918          DOI: 10.1038/sj.embor.7400641

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  24 in total

Review 1.  Ribonuclease P: the diversity of a ubiquitous RNA processing enzyme.

Authors:  A Schön
Journal:  FEMS Microbiol Rev       Date:  1999-06       Impact factor: 16.408

2.  Differential role of the intermolecular base-pairs G292-C(75) and G293-C(74) in the reaction catalyzed by Escherichia coli RNase P RNA.

Authors:  S Busch; L A Kirsebom; H Notbohm; R K Hartmann
Journal:  J Mol Biol       Date:  2000-06-16       Impact factor: 5.469

3.  The Bacillus subtilis RNase P holoenzyme contains two RNase P RNA and two RNase P protein subunits.

Authors:  X W Fang; X J Yang; K Littrell; S Niranjanakumari; P Thiyagarajan; C A Fierke; T R Sosnick; T Pan
Journal:  RNA       Date:  2001-02       Impact factor: 4.942

4.  Role of metal ions in the hydrolysis reaction catalyzed by RNase P RNA from Bacillus subtilis.

Authors:  J M Warnecke; R Held; S Busch; R K Hartmann
Journal:  J Mol Biol       Date:  1999-07-09       Impact factor: 5.469

5.  Protein activation of a ribozyme: the role of bacterial RNase P protein.

Authors:  Amy H Buck; Andrew B Dalby; Alexander W Poole; Alexei V Kazantsev; Norman R Pace
Journal:  EMBO J       Date:  2005-09-15       Impact factor: 11.598

6.  The 3' substrate determinants for the catalytic efficiency of the Bacillus subtilis RNase P holoenzyme suggest autolytic processing of the RNase P RNA in vivo.

Authors:  A Loria; T Pan
Journal:  RNA       Date:  2000-10       Impact factor: 4.942

7.  Product release is a rate-limiting step during cleavage by the catalytic RNA subunit of Escherichia coli RNase P.

Authors:  A Tallsjö; L A Kirsebom
Journal:  Nucleic Acids Res       Date:  1993-01-11       Impact factor: 16.971

8.  PcrA is an essential DNA helicase of Bacillus subtilis fulfilling functions both in repair and rolling-circle replication.

Authors:  M A Petit; E Dervyn; M Rose; K D Entian; S McGovern; S D Ehrlich; C Bruand
Journal:  Mol Microbiol       Date:  1998-07       Impact factor: 3.501

9.  Processing of the precursor to the catalytic RNA subunit of RNase P from Escherichia coli.

Authors:  U Lundberg; S Altman
Journal:  RNA       Date:  1995-05       Impact factor: 4.942

10.  Structural implications of novel diversity in eucaryal RNase P RNA.

Authors:  Steven M Marquez; J Kirk Harris; Scott T Kelley; James W Brown; Scott C Dawson; Elisabeth C Roberts; Norman R Pace
Journal:  RNA       Date:  2005-04-05       Impact factor: 4.942

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  21 in total

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Journal:  RNA       Date:  2010-07-13       Impact factor: 4.942

2.  Top-down causation by information control: from a philosophical problem to a scientific research programme.

Authors:  G Auletta; G F R Ellis; L Jaeger
Journal:  J R Soc Interface       Date:  2008-10-06       Impact factor: 4.118

3.  OLE RNA, an RNA motif that is highly conserved in several extremophilic bacteria, is a substrate for and can be regulated by RNase P RNA.

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Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-30       Impact factor: 11.205

4.  Essential is not irreplaceable: fitness dynamics of experimental E. coli RNase P RNA heterologous replacement.

Authors:  Jasmine L Loveland; Jocelyn Rice; Paula C G Turrini; Michelle Lizotte-Waniewski; Robert L Dorit
Journal:  J Mol Evol       Date:  2014-09-30       Impact factor: 2.395

Review 5.  Bacterial transfer RNAs.

Authors:  Jennifer Shepherd; Michael Ibba
Journal:  FEMS Microbiol Rev       Date:  2015-03-21       Impact factor: 16.408

6.  Downward causation by information control in micro-organisms.

Authors:  Luc Jaeger; Erin R Calkins
Journal:  Interface Focus       Date:  2011-09-29       Impact factor: 3.906

7.  Transcriptional cross-regulation between Gram-negative and gram-positive bacteria, demonstrated using ArgP-argO of Escherichia coli and LysG-lysE of Corynebacterium glutamicum.

Authors:  Carmelita N Marbaniang; J Gowrishankar
Journal:  J Bacteriol       Date:  2012-08-17       Impact factor: 3.490

8.  In vivo display of a multisubunit enzyme complex on biogenic magnetic nanoparticles.

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Journal:  Appl Environ Microbiol       Date:  2009-10-16       Impact factor: 4.792

9.  The ancient history of the structure of ribonuclease P and the early origins of Archaea.

Authors:  Feng-Jie Sun; Gustavo Caetano-Anollés
Journal:  BMC Bioinformatics       Date:  2010-03-24       Impact factor: 3.169

10.  Investigation of catalysis by bacterial RNase P via LNA and other modifications at the scissile phosphodiester.

Authors:  Simona Cuzic-Feltens; Michael H W Weber; Roland K Hartmann
Journal:  Nucleic Acids Res       Date:  2009-12       Impact factor: 16.971

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