Literature DB >> 20627997

Of proteins and RNA: the RNase P/MRP family.

Olga Esakova1, Andrey S Krasilnikov.   

Abstract

Nuclear ribonuclease (RNase) P is a ubiquitous essential ribonucleoprotein complex, one of only two known RNA-based enzymes found in all three domains of life. The RNA component is the catalytic moiety of RNases P across all phylogenetic domains; it contains a well-conserved core, whereas peripheral structural elements are diverse. RNA components of eukaryotic RNases P tend to be less complex than their bacterial counterparts, a simplification that is accompanied by a dramatic reduction of their catalytic ability in the absence of protein. The size and complexity of the protein moieties increase dramatically from bacterial to archaeal to eukaryotic enzymes, apparently reflecting the delegation of some structural functions from RNA to proteins and, perhaps, in response to the increased complexity of the cellular environment in the more evolutionarily advanced organisms; the reasons for the increased dependence on proteins are not clear. We review current information on RNase P and the closely related universal eukaryotic enzyme RNase MRP, focusing on their functions and structural organization.

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Year:  2010        PMID: 20627997      PMCID: PMC2924533          DOI: 10.1261/rna.2214510

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  270 in total

Review 1.  Recognition of nascent RNA by the human La antigen: conserved and divergent features of structure and function.

Authors:  R J Maraia; R V Intine
Journal:  Mol Cell Biol       Date:  2001-01       Impact factor: 4.272

2.  Recognition of the 5' leader of pre-tRNA substrates by the active site of ribonuclease P.

Authors:  Nathan H Zahler; Eric L Christian; Michael E Harris
Journal:  RNA       Date:  2003-06       Impact factor: 4.942

3.  A divalent cation stabilizes the active conformation of the B. subtilis RNase P x pre-tRNA complex: a role for an inner-sphere metal ion in RNase P.

Authors:  John Hsieh; Kristin S Koutmou; David Rueda; Markos Koutmos; Nils G Walter; Carol A Fierke
Journal:  J Mol Biol       Date:  2010-04-29       Impact factor: 5.469

4.  Nucleotides in precursor tRNAs that are required intact for catalysis by RNase P RNAs.

Authors:  D L Thurlow; D Shilowski; T L Marsh
Journal:  Nucleic Acids Res       Date:  1991-02-25       Impact factor: 16.971

5.  Catalytic activity of an RNA molecule prepared by transcription in vitro.

Authors:  C Guerrier-Takada; S Altman
Journal:  Science       Date:  1984-01-20       Impact factor: 47.728

6.  Extended structures in RNA folding intermediates are due to nonnative interactions rather than electrostatic repulsion.

Authors:  Nathan J Baird; Haipeng Gong; Syed S Zaheer; Karl F Freed; Tao Pan; Tobin R Sosnick
Journal:  J Mol Biol       Date:  2010-02-23       Impact factor: 5.469

7.  The yeast La protein is required for the 3' endonucleolytic cleavage that matures tRNA precursors.

Authors:  C J Yoo; S L Wolin
Journal:  Cell       Date:  1997-05-02       Impact factor: 41.582

8.  The ancient history of the structure of ribonuclease P and the early origins of Archaea.

Authors:  Feng-Jie Sun; Gustavo Caetano-Anollés
Journal:  BMC Bioinformatics       Date:  2010-03-24       Impact factor: 3.169

9.  Solution structure of Pyrococcus furiosus RPP21, a component of the archaeal RNase P holoenzyme, and interactions with its RPP29 protein partner.

Authors:  Carlos D Amero; William P Boomershine; Yiren Xu; Mark Foster
Journal:  Biochemistry       Date:  2008-10-16       Impact factor: 3.162

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  98 in total

1.  PRORP proteins support RNase P activity in both organelles and the nucleus in Arabidopsis.

Authors:  Bernard Gutmann; Anthony Gobert; Philippe Giegé
Journal:  Genes Dev       Date:  2012-05-01       Impact factor: 11.361

2.  Separation of telomerase functions by reverse genetics.

Authors:  Shibani Mukherjee; Eduardo J Firpo; Yang Wang; James M Roberts
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-26       Impact factor: 11.205

Review 3.  Roles of DEAD-box proteins in RNA and RNP Folding.

Authors:  Cynthia Pan; Rick Russell
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

4.  Substrate recognition by ribonucleoprotein ribonuclease MRP.

Authors:  Olga Esakova; Anna Perederina; Chao Quan; Igor Berezin; Andrey S Krasilnikov
Journal:  RNA       Date:  2010-12-20       Impact factor: 4.942

5.  Identification of 88 regulatory small RNAs in the TIGR4 strain of the human pathogen Streptococcus pneumoniae.

Authors:  Paloma Acebo; Antonio J Martin-Galiano; Sara Navarro; Angel Zaballos; Mónica Amblar
Journal:  RNA       Date:  2012-01-24       Impact factor: 4.942

6.  Pentatricopeptide repeats of protein-only RNase P use a distinct mode to recognize conserved bases and structural elements of pre-tRNA.

Authors:  Takamasa Teramoto; Kipchumba J Kaitany; Yoshimitsu Kakuta; Makoto Kimura; Carol A Fierke; Traci M Tanaka Hall
Journal:  Nucleic Acids Res       Date:  2020-12-02       Impact factor: 16.971

7.  Hypoxia elicits broad and systematic changes in protein subcellular localization.

Authors:  Robert Michael Henke; Ranita Ghosh Dastidar; Ajit Shah; Daniela Cadinu; Xiao Yao; Jagmohan Hooda; Li Zhang
Journal:  Am J Physiol Cell Physiol       Date:  2011-07-13       Impact factor: 4.249

8.  Interrogating translational efficiency and lineage-specific transcriptomes using ribosome affinity purification.

Authors:  Pingzhu Zhou; Yijing Zhang; Qing Ma; Fei Gu; Daniel S Day; Aibin He; Bin Zhou; Jing Li; Sean M Stevens; Daniel Romo; William T Pu
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-03       Impact factor: 11.205

9.  Functional implication of archaeal homologues of human RNase P protein pair Pop5 and Rpp30.

Authors:  Masato Hamasaki; Kohsuke Hazeyama; Fumihiko Iwasaki; Toshifumi Ueda; Takashi Nakashima; Yoshimitsu Kakuta; Makoto Kimura
Journal:  J Biochem       Date:  2015-07-07       Impact factor: 3.387

Review 10.  Non-coding RNAs and disease: the classical ncRNAs make a comeback.

Authors:  Rogerio Alves de Almeida; Marcin G Fraczek; Steven Parker; Daniela Delneri; Raymond T O'Keefe
Journal:  Biochem Soc Trans       Date:  2016-08-15       Impact factor: 5.407

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