Literature DB >> 16153177

Regulation of bacterial gene expression by riboswitches.

Wade C Winkler1, Ronald R Breaker.   

Abstract

Riboswitches are structured domains that usually reside in the noncoding regions of mRNAs, where they bind metabolites and control gene expression. Like their protein counterparts, these RNA gene control elements form highly specific binding pockets for the target metabolite and undergo allosteric changes in structure. Numerous classes of riboswitches are present in bacteria and they comprise a common and robust metabolite-sensing system.

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Year:  2005        PMID: 16153177     DOI: 10.1146/annurev.micro.59.030804.121336

Source DB:  PubMed          Journal:  Annu Rev Microbiol        ISSN: 0066-4227            Impact factor:   15.500


  273 in total

1.  Protonation states of the key active site residues and structural dynamics of the glmS riboswitch as revealed by molecular dynamics.

Authors:  Pavel Banás; Nils G Walter; Jirí Sponer; Michal Otyepka
Journal:  J Phys Chem B       Date:  2010-07-08       Impact factor: 2.991

Review 2.  Novel redox-sensing modules: accessory protein- and nucleic acid-mediated signaling.

Authors:  Gabriele Siedenburg; Matthew R Groves; Darío Ortiz de Orué Lucana
Journal:  Antioxid Redox Signal       Date:  2012-01-06       Impact factor: 8.401

3.  Light-dependent attenuation of phycoerythrin gene expression reveals convergent evolution of green light sensing in cyanobacteria.

Authors:  Ryan P Bezy; Lisa Wiltbank; David M Kehoe
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-31       Impact factor: 11.205

Review 4.  Bacterial RNA thermometers: molecular zippers and switches.

Authors:  Jens Kortmann; Franz Narberhaus
Journal:  Nat Rev Microbiol       Date:  2012-03-16       Impact factor: 60.633

5.  Kinetic analysis of aptazyme-regulated gene expression in a cell-free translation system: modeling of ligand-dependent and -independent expression.

Authors:  Shungo Kobori; Norikazu Ichihashi; Yasuaki Kazuta; Tomoaki Matsuura; Tetsuya Yomo
Journal:  RNA       Date:  2012-06-25       Impact factor: 4.942

6.  Real-time multidimensional NMR follows RNA folding with second resolution.

Authors:  Mi-Kyung Lee; Maayan Gal; Lucio Frydman; Gabriele Varani
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-03       Impact factor: 11.205

Review 7.  Themes and variations in riboswitch structure and function.

Authors:  Alla Peselis; Alexander Serganov
Journal:  Biochim Biophys Acta       Date:  2014-02-28

Review 8.  Computational analysis of riboswitch-based regulation.

Authors:  Eric I Sun; Dmitry A Rodionov
Journal:  Biochim Biophys Acta       Date:  2014-02-28

9.  Riboswitch control of gene expression in plants by splicing and alternative 3' end processing of mRNAs.

Authors:  Andreas Wachter; Meral Tunc-Ozdemir; Beth C Grove; Pamela J Green; David K Shintani; Ronald R Breaker
Journal:  Plant Cell       Date:  2007-11-09       Impact factor: 11.277

10.  RNA polymerase: a nexus of gene regulation.

Authors:  John D Helmann
Journal:  Methods       Date:  2009-01       Impact factor: 3.608

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