Literature DB >> 17429074

Analysis of P-body assembly in Saccharomyces cerevisiae.

Daniela Teixeira1, Roy Parker.   

Abstract

Recent experiments have defined cytoplasmic foci, referred to as processing bodies (P-bodies), that contain untranslating mRNAs in conjunction with proteins involved in translation repression and mRNA decapping and degradation. However, the order of protein assembly into P-bodies and the interactions that promote P-body assembly are unknown. To gain insight into how yeast P-bodies assemble, we examined the P-body accumulation of Dcp1p, Dcp2p, Edc3p, Dhh1p, Pat1p, Lsm1p, Xrn1p, Ccr4p, and Pop2p in deletion mutants lacking one or more P-body component. These experiments revealed that Dcp2p and Pat1p are required for recruitment of Dcp1p and of the Lsm1-7p complex to P-bodies, respectively. We also demonstrate that P-body assembly is redundant and no single known component of P-bodies is required for P-body assembly, although both Dcp2p and Pat1p contribute to P-body assembly. In addition, our results indicate that Pat1p can be a nuclear-cytoplasmic shuttling protein and acts early in P-body assembly. In contrast, the Lsm1-7p complex appears to primarily function in a rate limiting step after P-body assembly in triggering decapping. Taken together, these results provide insight both into the function of individual proteins involved in mRNA degradation and the mechanisms by which yeast P-bodies assemble.

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Year:  2007        PMID: 17429074      PMCID: PMC1877105          DOI: 10.1091/mbc.e07-03-0199

Source DB:  PubMed          Journal:  Mol Biol Cell        ISSN: 1059-1524            Impact factor:   4.138


  63 in total

1.  Recognition of yeast mRNAs as "nonsense containing" leads to both inhibition of mRNA translation and mRNA degradation: implications for the control of mRNA decapping.

Authors:  D Muhlrad; R Parker
Journal:  Mol Biol Cell       Date:  1999-11       Impact factor: 4.138

2.  Loss of translational control in yeast compromised for the major mRNA decay pathway.

Authors:  L E A Holmes; S G Campbell; S K De Long; A B Sachs; M P Ashe
Journal:  Mol Cell Biol       Date:  2004-04       Impact factor: 4.272

3.  Differential effects of translational inhibition in cis and in trans on the decay of the unstable yeast MFA2 mRNA.

Authors:  C A Beelman; R Parker
Journal:  J Biol Chem       Date:  1994-04-01       Impact factor: 5.157

4.  Glucose depletion rapidly inhibits translation initiation in yeast.

Authors:  M P Ashe; S K De Long; A B Sachs
Journal:  Mol Biol Cell       Date:  2000-03       Impact factor: 4.138

5.  An essential component of the decapping enzyme required for normal rates of mRNA turnover.

Authors:  C A Beelman; A Stevens; G Caponigro; T E LaGrandeur; L Hatfield; D M Fortner; R Parker
Journal:  Nature       Date:  1996-08-15       Impact factor: 49.962

6.  Dhh1p, a putative RNA helicase, associates with the general transcription factors Pop2p and Ccr4p from Saccharomyces cerevisiae.

Authors:  H Hata; H Mitsui; H Liu; Y Bai; C L Denis; Y Shimizu; A Sakai
Journal:  Genetics       Date:  1998-02       Impact factor: 4.562

7.  Mutations in trans-acting factors affecting mRNA decapping in Saccharomyces cerevisiae.

Authors:  L Hatfield; C A Beelman; A Stevens; R Parker
Journal:  Mol Cell Biol       Date:  1996-10       Impact factor: 4.272

8.  A complex containing the CCR4 and CAF1 proteins is involved in mRNA deadenylation in Drosophila.

Authors:  Claudia Temme; Sophie Zaessinger; Sylke Meyer; Martine Simonelig; Elmar Wahle
Journal:  EMBO J       Date:  2004-06-24       Impact factor: 11.598

9.  A mouse cytoplasmic exoribonuclease (mXRN1p) with preference for G4 tetraplex substrates.

Authors:  V I Bashkirov; H Scherthan; J A Solinger; J M Buerstedde; W D Heyer
Journal:  J Cell Biol       Date:  1997-02-24       Impact factor: 10.539

10.  Cytoplasmic foci are sites of mRNA decay in human cells.

Authors:  Nicolas Cougot; Sylvie Babajko; Bertrand Séraphin
Journal:  J Cell Biol       Date:  2004-04-05       Impact factor: 10.539

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  124 in total

1.  A genome-wide RNAi screen identifies genes regulating the formation of P bodies in C. elegans and their functions in NMD and RNAi.

Authors:  Yinyan Sun; Peiguo Yang; Yuxia Zhang; Xin Bao; Jun Li; Wenru Hou; Xiangyu Yao; Jinghua Han; Hong Zhang
Journal:  Protein Cell       Date:  2011-12-17       Impact factor: 14.870

2.  The structural basis of Edc3- and Scd6-mediated activation of the Dcp1:Dcp2 mRNA decapping complex.

Authors:  Simon A Fromm; Vincent Truffault; Julia Kamenz; Joerg E Braun; Niklas A Hoffmann; Elisa Izaurralde; Remco Sprangers
Journal:  EMBO J       Date:  2011-11-15       Impact factor: 11.598

Review 3.  P-bodies and stress granules: possible roles in the control of translation and mRNA degradation.

Authors:  Carolyn J Decker; Roy Parker
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-09-01       Impact factor: 10.005

4.  A quantitative inventory of yeast P body proteins reveals principles of composition and specificity.

Authors:  Wenmin Xing; Denise Muhlrad; Roy Parker; Michael K Rosen
Journal:  Elife       Date:  2020-06-19       Impact factor: 8.140

5.  Pat1 contains distinct functional domains that promote P-body assembly and activation of decapping.

Authors:  Guy R Pilkington; Roy Parker
Journal:  Mol Cell Biol       Date:  2007-12-17       Impact factor: 4.272

6.  Accumulation of polyadenylated mRNA, Pab1p, eIF4E, and eIF4G with P-bodies in Saccharomyces cerevisiae.

Authors:  Muriel Brengues; Roy Parker
Journal:  Mol Biol Cell       Date:  2007-05-02       Impact factor: 4.138

Review 7.  Deadenylation and P-bodies.

Authors:  Chyi-Ying A Chen; Ann-Bin Shyu
Journal:  Adv Exp Med Biol       Date:  2013       Impact factor: 2.622

Review 8.  Relationship of GW/P-bodies with stress granules.

Authors:  Georg Stoecklin; Nancy Kedersha
Journal:  Adv Exp Med Biol       Date:  2013       Impact factor: 2.622

9.  P-body components are required for Ty1 retrotransposition during assembly of retrotransposition-competent virus-like particles.

Authors:  Mary Ann Checkley; Kunio Nagashima; Stephen J Lockett; Katherine M Nyswaner; David J Garfinkel
Journal:  Mol Cell Biol       Date:  2009-11-09       Impact factor: 4.272

10.  Divergence of the expression and subcellular localization of CCR4-associated factor 1 (CAF1) deadenylase proteins in Oryza sativa.

Authors:  Wei-Lun Chou; Li-Fen Huang; Jhen-Cheng Fang; Ching-Hui Yeh; Chwan-Yang Hong; Shaw-Jye Wu; Chung-An Lu
Journal:  Plant Mol Biol       Date:  2014-05-08       Impact factor: 4.076

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