Literature DB >> 17475768

Accumulation of polyadenylated mRNA, Pab1p, eIF4E, and eIF4G with P-bodies in Saccharomyces cerevisiae.

Muriel Brengues1, Roy Parker.   

Abstract

Recent experiments have shown that mRNAs can move between polysomes and P-bodies, which are aggregates of nontranslating mRNAs associated with translational repressors and the mRNA decapping machinery. The transitions between polysomes and P-bodies and how the poly(A) tail and the associated poly(A) binding protein 1 (Pab1p) may affect this process are unknown. Herein, we provide evidence that poly(A)(+) mRNAs can enter P-bodies in yeast. First, we show that both poly(A)(-) and poly(A)(+) mRNA become translationally repressed during glucose deprivation, where mRNAs accumulate in P-bodies. In addition, both poly(A)(+) transcripts and/or Pab1p can be detected in P-bodies during glucose deprivation and in stationary phase. Cells lacking Pab1p have enlarged P-bodies, suggesting that Pab1p plays a direct or indirect role in shifting the equilibrium of mRNAs away from P-bodies and into translation, perhaps by aiding in the assembly of a type of mRNP within P-bodies that is poised to reenter translation. Consistent with this latter possibility, we observed the translation initiation factors (eIF)4E and eIF4G in P-bodies at a low level during glucose deprivation and at high levels in stationary phase. Moreover, Pab1p exited P-bodies much faster than Dcp2p when stationary phase cells were given fresh nutrients. Together, these results suggest that polyadenylated mRNAs can enter P-bodies, and an mRNP complex including poly(A)(+) mRNA, Pab1p, eIF4E, and eIF4G2 may represent a transition state during the process of mRNAs exchanging between P-bodies and translation.

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Year:  2007        PMID: 17475768      PMCID: PMC1924816          DOI: 10.1091/mbc.e06-12-1149

Source DB:  PubMed          Journal:  Mol Biol Cell        ISSN: 1059-1524            Impact factor:   4.138


  61 in total

1.  Targeting an mRNA for decapping: displacement of translation factors and association of the Lsm1p-7p complex on deadenylated yeast mRNAs.

Authors:  S Tharun; R Parker
Journal:  Mol Cell       Date:  2001-11       Impact factor: 17.970

2.  Sum1, a component of the fission yeast eIF3 translation initiation complex, is rapidly relocalized during environmental stress and interacts with components of the 26S proteasome.

Authors:  Isabelle Dunand-Sauthier; Carol Walker; Caroline Wilkinson; Colin Gordon; Richard Crane; Chris Norbury; Tim Humphrey
Journal:  Mol Biol Cell       Date:  2002-05       Impact factor: 4.138

3.  Global and specific translational regulation in the genomic response of Saccharomyces cerevisiae to a rapid transfer from a fermentable to a nonfermentable carbon source.

Authors:  K M Kuhn; J L DeRisi; P O Brown; P Sarnow
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

4.  The transcription factor associated Ccr4 and Caf1 proteins are components of the major cytoplasmic mRNA deadenylase in Saccharomyces cerevisiae.

Authors:  M Tucker; M A Valencia-Sanchez; R R Staples; J Chen; C L Denis; R Parker
Journal:  Cell       Date:  2001-02-09       Impact factor: 41.582

5.  Poly(A)-binding proteins regulate both mRNA deadenylation and decapping in yeast cytoplasmic extracts.

Authors:  C J Wilusz; M Gao; C L Jones; J Wilusz; S W Peltz
Journal:  RNA       Date:  2001-10       Impact factor: 4.942

6.  Transient inhibition of translation initiation by osmotic stress.

Authors:  Yukifumi Uesono; Akio Toh-E
Journal:  J Biol Chem       Date:  2002-01-16       Impact factor: 5.157

7.  The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes.

Authors:  J M Coller; M Tucker; U Sheth; M A Valencia-Sanchez; R Parker
Journal:  RNA       Date:  2001-12       Impact factor: 4.942

8.  The two proteins Pat1p (Mrt1p) and Spb8p interact in vivo, are required for mRNA decay, and are functionally linked to Pab1p.

Authors:  C Bonnerot; R Boeck; B Lapeyre
Journal:  Mol Cell Biol       Date:  2000-08       Impact factor: 4.272

9.  Poly(A)-binding protein acts in translation termination via eukaryotic release factor 3 interaction and does not influence [PSI(+)] propagation.

Authors:  Bertrand Cosson; Anne Couturier; Svetlana Chabelskaya; Denis Kiktev; Sergey Inge-Vechtomov; Michel Philippe; Galina Zhouravleva
Journal:  Mol Cell Biol       Date:  2002-05       Impact factor: 4.272

10.  Analysis of P-body assembly in Saccharomyces cerevisiae.

Authors:  Daniela Teixeira; Roy Parker
Journal:  Mol Biol Cell       Date:  2007-04-11       Impact factor: 4.138

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  69 in total

Review 1.  P-bodies and stress granules: possible roles in the control of translation and mRNA degradation.

Authors:  Carolyn J Decker; Roy Parker
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-09-01       Impact factor: 10.005

Review 2.  Processing bodies and plant development.

Authors:  Jun Xu; Nam-Hai Chua
Journal:  Curr Opin Plant Biol       Date:  2010-11-11       Impact factor: 7.834

3.  A novel class of mRNA-containing cytoplasmic granules are produced in response to UV-irradiation.

Authors:  Hélène Gaillard; Andrés Aguilera
Journal:  Mol Biol Cell       Date:  2008-09-03       Impact factor: 4.138

Review 4.  Deadenylation and P-bodies.

Authors:  Chyi-Ying A Chen; Ann-Bin Shyu
Journal:  Adv Exp Med Biol       Date:  2013       Impact factor: 2.622

5.  P-body components are required for Ty1 retrotransposition during assembly of retrotransposition-competent virus-like particles.

Authors:  Mary Ann Checkley; Kunio Nagashima; Stephen J Lockett; Katherine M Nyswaner; David J Garfinkel
Journal:  Mol Cell Biol       Date:  2009-11-09       Impact factor: 4.272

6.  Global phosphoproteomics identifies a major role for AKT and 14-3-3 in regulating EDC3.

Authors:  Mark Larance; Alexander F Rowland; Kyle L Hoehn; David T Humphreys; Thomas Preiss; Michael Guilhaus; David E James
Journal:  Mol Cell Proteomics       Date:  2010-01-05       Impact factor: 5.911

7.  Dcp2 phosphorylation by Ste20 modulates stress granule assembly and mRNA decay in Saccharomyces cerevisiae.

Authors:  Je-Hyun Yoon; Eui-Ju Choi; Roy Parker
Journal:  J Cell Biol       Date:  2010-05-31       Impact factor: 10.539

8.  Localization to, and effects of Pbp1, Pbp4, Lsm12, Dhh1, and Pab1 on stress granules in Saccharomyces cerevisiae.

Authors:  Kylie D Swisher; Roy Parker
Journal:  PLoS One       Date:  2010-04-02       Impact factor: 3.240

9.  Vgl1, a multi-KH domain protein, is a novel component of the fission yeast stress granules required for cell survival under thermal stress.

Authors:  Wei-Ling Wen; Abigail L Stevenson; Chun-Yu Wang; Hsiang-Ju Chen; Stephen E Kearsey; Chris J Norbury; Stephen Watt; Jürg Bähler; Shao-Win Wang
Journal:  Nucleic Acids Res       Date:  2010-06-14       Impact factor: 16.971

10.  A novel link between Sus1 and the cytoplasmic mRNA decay machinery suggests a broad role in mRNA metabolism.

Authors:  Bernardo Cuenca-Bono; Varinia García-Molinero; Pau Pascual-García; Encar García-Oliver; Ana Llopis; Susana Rodríguez-Navarro
Journal:  BMC Cell Biol       Date:  2010-03-15       Impact factor: 4.241

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