Literature DB >> 17176107

Mechanistic studies of the flavoenzyme tryptophan 2-monooxygenase: deuterium and 15N kinetic isotope effects on alanine oxidation by an L-amino acid oxidase.

Erik C Ralph1, Mark A Anderson, W Wallace Cleland, Paul F Fitzpatrick.   

Abstract

Tryptophan 2-monooxygenase (TMO) from Pseudomonas savastanoi catalyzes the oxidative decarboxylation of l-tryptophan during the biosynthesis of indoleacetic acid. Structurally and mechanistically, the enzyme is a member of the family of l-amino acid oxidases. Deuterium and 15N kinetic isotope effects were used to probe the chemical mechanism of l-alanine oxidation by TMO. The primary deuterium kinetic isotope effect was pH independent over the pH range 6.5-10, with an average value of 6.0 +/- 0.5, consistent with this being the intrinsic value. The deuterium isotope effect on the rate constant for flavin reduction by alanine was 6.3 +/- 0.9; no intermediate flavin species were observed during flavin reduction. The kcat/Kala value was 1.0145 +/- 0.0007 at pH 8. NMR analyses gave an equilibrium 15N isotope effect for deprotonation of the alanine amino group of 1.0233 +/- 0.0004, allowing calculation of the 15N isotope effect on the CH bond cleavage step of 0.9917 +/- 0.0006. The results are consistent with TMO oxidation of alanine occurring through a hydride transfer mechanism.

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Year:  2006        PMID: 17176107      PMCID: PMC1994567          DOI: 10.1021/bi061894o

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  28 in total

1.  Purification and characterization of the flavoprotein tryptophan 2-monooxygenase expressed at high levels in Escherichia coli.

Authors:  J J Emanuele; C J Heasley; P F Fitzpatrick
Journal:  Arch Biochem Biophys       Date:  1995-01-10       Impact factor: 4.013

2.  Mechanistic studies of the flavoprotein tryptophan 2-monooxygenase. 1. Kinetic mechanism.

Authors:  J J Emanuele; P F Fitzpatrick
Journal:  Biochemistry       Date:  1995-03-21       Impact factor: 3.162

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Journal:  J Biol Chem       Date:  1974-04-25       Impact factor: 5.157

4.  Purification and characterization of a novel L-phenylalanine oxidase (Deaminating and decarboxylating) from Pseudomonas sp. P-501.

Authors:  H Koyama
Journal:  J Biochem       Date:  1982-10       Impact factor: 3.387

5.  Nucleotide sequence of the tms genes of the pTiA6NC octopine Ti plasmid: two gene products involved in plant tumorigenesis.

Authors:  H Klee; A Montoya; F Horodyski; C Lichtenstein; D Garfinkel; S Fuller; C Flores; J Peschon; E Nester; M Gordon
Journal:  Proc Natl Acad Sci U S A       Date:  1984-03       Impact factor: 11.205

6.  Use of nitrogen-15 and deuterium isotope effects to determine the chemical mechanism of phenylalanine ammonia-lyase.

Authors:  J D Hermes; P M Weiss; W W Cleland
Journal:  Biochemistry       Date:  1985-06-04       Impact factor: 3.162

7.  Oxidation-reduction properties of trimethylamine dehydrogenase: effect of inhibitor binding.

Authors:  C P Pace; M T Stankovich
Journal:  Arch Biochem Biophys       Date:  1991-05-15       Impact factor: 4.013

8.  Involvement of plasmid deoxyribonucleic acid in indoleacetic acid synthesis in Pseudomonas savastanoi.

Authors:  L Comai; T Kosuge
Journal:  J Bacteriol       Date:  1980-08       Impact factor: 3.490

9.  Intrinsic primary, secondary, and solvent kinetic isotope effects on the reductive half-reaction of D-amino acid oxidase: evidence against a concerted mechanism.

Authors:  J M Denu; P F Fitzpatrick
Journal:  Biochemistry       Date:  1994-04-05       Impact factor: 3.162

10.  Structure-activity relationships in the oxidation of benzylamine analogues by bovine liver mitochondrial monoamine oxidase B.

Authors:  M C Walker; D E Edmondson
Journal:  Biochemistry       Date:  1994-06-14       Impact factor: 3.162

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  23 in total

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Authors:  Mariya S Adachi; Alexander B Taylor; P John Hart; Paul F Fitzpatrick
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2.  Insights into the mechanism of flavoprotein-catalyzed amine oxidation from nitrogen isotope effects on the reaction of N-methyltryptophan oxidase.

Authors:  Erik C Ralph; Jennifer S Hirschi; Mark A Anderson; W Wallace Cleland; Daniel A Singleton; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2007-06-02       Impact factor: 3.162

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5.  13C kinetic isotope effects on the reaction of a flavin amine oxidase determined from whole molecule isotope effects.

Authors:  José R Tormos; Marina B Suarez; Paul F Fitzpatrick
Journal:  Arch Biochem Biophys       Date:  2016-11-01       Impact factor: 4.013

6.  Mechanistic and structural analyses of the roles of Arg409 and Asp402 in the reaction of the flavoprotein nitroalkane oxidase.

Authors:  Paul F Fitzpatrick; Dragana M Bozinovski; Annie Héroux; Patrick G Shaw; Michael P Valley; Allen M Orville
Journal:  Biochemistry       Date:  2007-11-10       Impact factor: 3.162

7.  Mechanistic studies of human spermine oxidase: kinetic mechanism and pH effects.

Authors:  Mariya S Adachi; Paul R Juarez; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2010-01-19       Impact factor: 3.162

8.  Structure of the flavoprotein tryptophan 2-monooxygenase, a key enzyme in the formation of galls in plants.

Authors:  Helena M Gaweska; Alexander B Taylor; P John Hart; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2013-04-04       Impact factor: 3.162

9.  Use of pH and kinetic isotope effects to establish chemistry as rate-limiting in oxidation of a peptide substrate by LSD1.

Authors:  Helena Gaweska; Michelle Henderson Pozzi; Dawn M Z Schmidt; Dewey G McCafferty; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2009-06-16       Impact factor: 3.162

10.  Insights into the mechanisms of flavoprotein oxidases from kinetic isotope effects.

Authors:  Paul F Fitzpatrick
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