Literature DB >> 20000632

Mechanistic studies of human spermine oxidase: kinetic mechanism and pH effects.

Mariya S Adachi1, Paul R Juarez, Paul F Fitzpatrick.   

Abstract

In mammalian cells, the flavoprotein spermine oxidase (SMO) catalyzes the oxidation of spermine to spermidine and 3-aminopropanal. Mechanistic studies have been conducted with the recombinant human enzyme. The initial velocity pattern in which the ratio between the concentrations of spermine and oxygen is kept constant establishes the steady-state kinetic pattern as ping-pong. Reduction of SMO by spermine in the absence of oxygen is biphasic. The rate constant for the rapid phase varies with the substrate concentration, with a limiting value (k(3)) of 49 s(-1) and an apparent K(d) value of 48 microM at pH 8.3. The rate constant for the slow step is independent of the spermine concentration, with a value of 5.5 s(-1), comparable to the k(cat) value of 6.6 s(-1). The kinetics of the oxidative half-reaction depend on the aging time after the spermine and enzyme are mixed in a double-mixing experiment. At an aging time of 6 s, the reaction is monophasic with a second-order rate constant of 4.2 mM(-1) s(-1). At an aging time of 0.3 s, the reaction is biphasic with two second-order constants equal to 4.0 and 40 mM(-1) s(-1). Neither is equal to the k(cat)/K(O(2)) value of 13 mM(-1) s(-1). These results establish the existence of more than one pathway for the reaction of the reduced flavin intermediate with oxygen. The k(cat)/K(M) value for spermine exhibits a bell-shaped pH profile, with an average pK(a) value of 8.3. This profile is consistent with the active form of spermine having three charged nitrogens. The pH profile for k(3) shows a pK(a) value of 7.4 for a group that must be unprotonated. The pK(i)-pH profiles for the competitive inhibitors N,N'-dibenzylbutane-1,4-diamine and spermidine show that the fully protonated forms of the inhibitors and the unprotonated form of an amino acid residue with a pK(a) of approximately 7.4 in the active site are preferred for binding.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20000632      PMCID: PMC2810717          DOI: 10.1021/bi9017945

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  32 in total

1.  Peroxisomes in human fibroblasts have a basic pH.

Authors:  T B Dansen; K W Wirtz; R J Wanders; E H Pap
Journal:  Nat Cell Biol       Date:  2000-01       Impact factor: 28.824

2.  A new method for preparing flavin-adenine dinucleotide.

Authors:  L G WHITBY
Journal:  Biochem J       Date:  1953-06       Impact factor: 3.857

Review 3.  Chemical aspects of amine oxidation by flavoprotein enzymes.

Authors:  Nigel S Scrutton
Journal:  Nat Prod Rep       Date:  2004-10-20       Impact factor: 13.423

4.  pH and kinetic isotope effects on sarcosine oxidation by N-methyltryptophan oxidase.

Authors:  Erik C Ralph; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2005-03-01       Impact factor: 3.162

5.  FAD-containing polyamine oxidases: a timely challenge for researchers in biochemistry and physiology of plants.

Authors:  M Sebela; A Radová; R Angelini; P Tavladoraki; P Pec
Journal:  Plant Sci       Date:  2001-01-05       Impact factor: 4.729

6.  A 30-angstrom-long U-shaped catalytic tunnel in the crystal structure of polyamine oxidase.

Authors:  C Binda; A Coda; R Angelini; R Federico; P Ascenzi; A Mattevi
Journal:  Structure       Date:  1999-03-15       Impact factor: 5.006

7.  Mechanistic studies of mouse polyamine oxidase with N1,N12-bisethylspermine as a substrate.

Authors:  Montserrat Royo; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2005-05-10       Impact factor: 3.162

8.  Cloning and characterization of a human polyamine oxidase that is inducible by polyamine analogue exposure.

Authors:  Y Wang; W Devereux; P M Woster; T M Stewart; A Hacker; R A Casero
Journal:  Cancer Res       Date:  2001-07-15       Impact factor: 12.701

9.  Identification and characterization of a novel flavin-containing spermine oxidase of mammalian cell origin.

Authors:  Slavoljub Vujcic; Paula Diegelman; Cyrus J Bacchi; Debora L Kramer; Carl W Porter
Journal:  Biochem J       Date:  2002-11-01       Impact factor: 3.857

10.  Intrinsic primary, secondary, and solvent kinetic isotope effects on the reductive half-reaction of D-amino acid oxidase: evidence against a concerted mechanism.

Authors:  J M Denu; P F Fitzpatrick
Journal:  Biochemistry       Date:  1994-04-05       Impact factor: 3.162

View more
  14 in total

1.  Mechanistic and structural analyses of the role of His67 in the yeast polyamine oxidase Fms1.

Authors:  Mariya S Adachi; Alexander B Taylor; P John Hart; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2012-06-05       Impact factor: 3.162

2.  Mechanism of Flavoprotein l-6-Hydroxynicotine Oxidase: pH and Solvent Isotope Effects and Identification of Key Active Site Residues.

Authors:  Paul F Fitzpatrick; Fatemeh Chadegani; Shengnan Zhang; Vi Dougherty
Journal:  Biochemistry       Date:  2017-01-26       Impact factor: 3.162

Review 3.  Current status of the polyamine research field.

Authors:  Anthony E Pegg; Robert A Casero
Journal:  Methods Mol Biol       Date:  2011

4.  Mechanism of the Flavoprotein d-6-Hydroxynicotine Oxidase: Substrate Specificity, pH and Solvent Isotope Effects, and Roles of Key Active-Site Residues.

Authors:  Paul F Fitzpatrick; Vi Dougherty; Bishnu Subedi; Jesus Quilantan; Cynthia S Hinck; Andreina I Lujan; Jose R Tormos
Journal:  Biochemistry       Date:  2019-05-10       Impact factor: 3.162

5.  Isotope effects suggest a stepwise mechanism for berberine bridge enzyme.

Authors:  Helena M Gaweska; Kenneth M Roberts; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2012-09-06       Impact factor: 3.162

Review 6.  Structure-function relationships in the evolutionary framework of spermine oxidase.

Authors:  Manuela Cervelli; Daniele Salvi; Fabio Polticelli; Roberto Amendola; Paolo Mariottini
Journal:  J Mol Evol       Date:  2013-07-05       Impact factor: 2.395

7.  Mechanistic Studies of an Amine Oxidase Derived from d-Amino Acid Oxidase.

Authors:  Elizabeth E Trimmer; Udayanga S Wanninayake; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2017-04-03       Impact factor: 3.162

8.  Mechanistic and structural analyses of the roles of active site residues in yeast polyamine oxidase Fms1: characterization of the N195A and D94N enzymes.

Authors:  Mariya S Adachi; Alexander B Taylor; P John Hart; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2012-10-15       Impact factor: 3.162

9.  Pentamines as substrate for human spermine oxidase.

Authors:  Koichi Takao; Akira Shirahata; Keijiro Samejima; Robert Anthony Casero; Kazuei Igarashi; Yoshiaki Sugita
Journal:  Biol Pharm Bull       Date:  2013       Impact factor: 2.233

10.  Mechanism of the Flavoprotein L-Hydroxynicotine Oxidase: Kinetic Mechanism, Substrate Specificity, Reaction Product, and Roles of Active-Site Residues.

Authors:  Paul F Fitzpatrick; Fatemeh Chadegani; Shengnan Zhang; Kenneth M Roberts; Cynthia S Hinck
Journal:  Biochemistry       Date:  2016-01-15       Impact factor: 3.162

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.