Literature DB >> 25416784

Experimental evidence for a hydride transfer mechanism in plant glycolate oxidase catalysis.

Younès Dellero1, Caroline Mauve2, Edouard Boex-Fontvieille1, Valérie Flesch1, Mathieu Jossier1, Guillaume Tcherkez3, Michael Hodges4.   

Abstract

In plants, glycolate oxidase is involved in the photorespiratory cycle, one of the major fluxes at the global scale. To clarify both the nature of the mechanism and possible differences in glycolate oxidase enzyme chemistry from C3 and C4 plant species, we analyzed kinetic parameters of purified recombinant C3 (Arabidopsis thaliana) and C4 (Zea mays) plant enzymes and compared isotope effects using natural and deuterated glycolate in either natural or deuterated solvent. The (12)C/(13)C isotope effect was also investigated for each plant glycolate oxidase protein by measuring the (13)C natural abundance in glycolate using natural or deuterated glycolate as a substrate. Our results suggest that several elemental steps were associated with an hydrogen/deuterium isotope effect and that glycolate α-deprotonation itself was only partially rate-limiting. Calculations of commitment factors from observed kinetic isotope effect values support a hydride transfer mechanism. No significant differences were seen between C3 and C4 enzymes.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Catalysis; Enzyme; Glycolate Oxidase; Hydride Transfer; Isotope Effect; Oxidase; Photorespiration; Plant

Mesh:

Substances:

Year:  2014        PMID: 25416784      PMCID: PMC4340412          DOI: 10.1074/jbc.M114.618629

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  48 in total

1.  Probing the relative timing of hydrogen abstraction steps in the flavocytochrome b2 reaction with primary and solvent deuterium isotope effects and mutant enzymes.

Authors:  P Sobrado; S C Daubner; P F Fitzpatrick
Journal:  Biochemistry       Date:  2001-01-30       Impact factor: 3.162

2.  Oxidation of glyoxylic acid to oxalic acid by glycolic acid oxidase.

Authors:  K E RICHARDSON; N E TOLBERT
Journal:  J Biol Chem       Date:  1961-05       Impact factor: 5.157

3.  Plant and animal glycolate oxidases have a common eukaryotic ancestor and convergently duplicated to evolve long-chain 2-hydroxy acid oxidases.

Authors:  Christian Esser; Anke Kuhn; Georg Groth; Martin J Lercher; Veronica G Maurino
Journal:  Mol Biol Evol       Date:  2014-01-09       Impact factor: 16.240

4.  Three-dimensional structures of glycolate oxidase with bound active-site inhibitors.

Authors:  K Stenberg; Y Lindqvist
Journal:  Protein Sci       Date:  1997-05       Impact factor: 6.725

Review 5.  Protein phosphorylation and photorespiration.

Authors:  M Hodges; M Jossier; E Boex-Fontvieille; G Tcherkez
Journal:  Plant Biol (Stuttg)       Date:  2013-03-18       Impact factor: 3.081

6.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

7.  Insights into the mechanisms of flavoprotein oxidases from kinetic isotope effects.

Authors:  Paul F Fitzpatrick
Journal:  J Labelled Comp Radiopharm       Date:  2007-10       Impact factor: 1.921

8.  Purification and characterization of recombinant human liver glycolate oxidase.

Authors:  Caroline Vignaud; Nicolas Pietrancosta; Emma L Williams; Gill Rumsby; Florence Lederer
Journal:  Arch Biochem Biophys       Date:  2007-06-29       Impact factor: 4.013

9.  Purification and characterization of glycolate oxidase from pumpkin cotyledons.

Authors:  M Nishimura; Y D Akhmedov; K Strzalka; T Akazawa
Journal:  Arch Biochem Biophys       Date:  1983-04-15       Impact factor: 4.013

10.  Use of multiple isotope effects to study the mechanism of 6-phosphogluconate dehydrogenase.

Authors:  A R Rendina; J D Hermes; W W Cleland
Journal:  Biochemistry       Date:  1984-12-04       Impact factor: 3.162

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  7 in total

1.  Phosphomimetic T335D Mutation of Hydroxypyruvate Reductase 1 Modifies Cofactor Specificity and Impacts Arabidopsis Growth in Air.

Authors:  Yanpei Liu; Florence Guérard; Michael Hodges; Mathieu Jossier
Journal:  Plant Physiol       Date:  2020-03-10       Impact factor: 8.340

2.  Lack of GLYCOLATE OXIDASE1, but Not GLYCOLATE OXIDASE2, Attenuates the Photorespiratory Phenotype of CATALASE2-Deficient Arabidopsis.

Authors:  Pavel Kerchev; Cezary Waszczak; Aleksandra Lewandowska; Patrick Willems; Alexey Shapiguzov; Zhen Li; Saleh Alseekh; Per Mühlenbock; Frank A Hoeberichts; Jingjing Huang; Katrien Van Der Kelen; Jaakko Kangasjärvi; Alisdair R Fernie; Riet De Smet; Yves Van de Peer; Joris Messens; Frank Van Breusegem
Journal:  Plant Physiol       Date:  2016-05-25       Impact factor: 8.340

3.  Conformational flexibility related to enzyme activity: evidence for a dynamic active-site gatekeeper function of Tyr(215) in Aerococcus viridans lactate oxidase.

Authors:  Thomas Stoisser; Michael Brunsteiner; David K Wilson; Bernd Nidetzky
Journal:  Sci Rep       Date:  2016-06-15       Impact factor: 4.379

4.  Enzymatic Properties of Recombinant Phospho-Mimetic Photorespiratory Glycolate Oxidases from Arabidopsis thaliana and Zea mays.

Authors:  Mathieu Jossier; Yanpei Liu; Sophie Massot; Michael Hodges
Journal:  Plants (Basel)       Date:  2019-12-24

5.  Experimental and computational investigation of enzyme functional annotations uncovers misannotation in the EC 1.1.3.15 enzyme class.

Authors:  Elzbieta Rembeza; Martin K M Engqvist
Journal:  PLoS Comput Biol       Date:  2021-09-23       Impact factor: 4.475

6.  DspA/E-Triggered Non-Host Resistance against E. amylovora Depends on the Arabidopsis GLYCOLATE OXIDASE 2 Gene.

Authors:  Alban Launay; Sylvie Jolivet; Gilles Clément; Marco Zarattini; Younes Dellero; Rozenn Le Hir; Mathieu Jossier; Michael Hodges; Dominique Expert; Mathilde Fagard
Journal:  Int J Mol Sci       Date:  2022-04-11       Impact factor: 6.208

7.  FMN-dependent oligomerization of putative lactate oxidase from Pediococcus acidilactici.

Authors:  Yashwanth Ashok; Mirko M Maksimainen; Tuija Kallio; Pekka Kilpeläinen; Lari Lehtiö
Journal:  PLoS One       Date:  2020-02-24       Impact factor: 3.240

  7 in total

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