Literature DB >> 19890477

Insights into the mechanisms of flavoprotein oxidases from kinetic isotope effects.

Paul F Fitzpatrick1.   

Abstract

Deuterium, solvent, and (15)N kinetic isotope effects have been used to probe the mechanisms by which flavoproteins oxidize carbon-oxygen and carbon-nitrogen bonds in amines, hydroxy acids, and alcohols. For the amine oxidases d-amino acid oxidase, N-methyltryptophan oxidase, and tryptophan monooxygenase, d-serine, sarcosine, and alanine are slow substrates for which CH bond cleavage is fully rate limiting. Inverse isotope effects for each of 0.992-0.996 are consistent with a common mechanism involving hydride transfer from the uncharged amine. Computational analyses of possible mechanisms support this conclusion. Deuterium and solvent isotope effects with wild-type and mutant variants of the lactate dehydrogenase flavocytochrome b(2) show that OH and CH bond cleavage are not concerted, but become so in the Y254F enzyme. This is consistent with a highly asynchronous reaction in which OH bond cleavage precedes hydride transfer. The results of Hammett analyses and solvent and deuterium isotope effects support a similar mechanism for alcohol oxidase.

Entities:  

Year:  2007        PMID: 19890477      PMCID: PMC2771875          DOI: 10.1002/jlcr.1400

Source DB:  PubMed          Journal:  J Labelled Comp Radiopharm        ISSN: 0362-4803            Impact factor:   1.921


  55 in total

1.  Probing the relative timing of hydrogen abstraction steps in the flavocytochrome b2 reaction with primary and solvent deuterium isotope effects and mutant enzymes.

Authors:  P Sobrado; S C Daubner; P F Fitzpatrick
Journal:  Biochemistry       Date:  2001-01-30       Impact factor: 3.162

2.  Structure of the sodium borohydride-reduced N-(cyclopropyl)glycine adduct of the flavoenzyme monomeric sarcosine oxidase.

Authors:  Zhi-wei Chen; Gouhua Zhao; Suzana Martinovic; Marilyn Schuman Jorns; F Scott Mathews
Journal:  Biochemistry       Date:  2005-11-29       Impact factor: 3.162

3.  Three-dimensional structure of flavocytochrome b2 from baker's yeast at 3.0-A resolution.

Authors:  Z X Xia; N Shamala; P H Bethge; L W Lim; H D Bellamy; N H Xuong; F Lederer; F S Mathews
Journal:  Proc Natl Acad Sci U S A       Date:  1987-05       Impact factor: 11.205

4.  Proton release during the reductive half-reaction of D-amino acid oxidase.

Authors:  P F Fitzpatrick; V Massey
Journal:  J Biol Chem       Date:  1982-09-10       Impact factor: 5.157

5.  On the catalytic role of the conserved active site residue His466 of choline oxidase.

Authors:  Mahmoud Ghanem; Giovanni Gadda
Journal:  Biochemistry       Date:  2005-01-25       Impact factor: 3.162

6.  A 30-angstrom-long U-shaped catalytic tunnel in the crystal structure of polyamine oxidase.

Authors:  C Binda; A Coda; R Angelini; R Federico; P Ascenzi; A Mattevi
Journal:  Structure       Date:  1999-03-15       Impact factor: 5.006

7.  Crystal structure analysis of recombinant rat kidney long chain hydroxy acid oxidase.

Authors:  Louise M Cunane; John D Barton; Zhi-wei Chen; K H Diêp Lê; David Amar; Florence Lederer; F Scott Mathews
Journal:  Biochemistry       Date:  2005-02-08       Impact factor: 3.162

8.  Functional role of the "aromatic cage" in human monoamine oxidase B: structures and catalytic properties of Tyr435 mutant proteins.

Authors:  Min Li; Claudia Binda; Andrea Mattevi; Dale E Edmondson
Journal:  Biochemistry       Date:  2006-04-18       Impact factor: 3.162

9.  The structure of L-amino acid oxidase reveals the substrate trajectory into an enantiomerically conserved active site.

Authors:  P D Pawelek; J Cheah; R Coulombe; P Macheroux; S Ghisla; A Vrielink
Journal:  EMBO J       Date:  2000-08-15       Impact factor: 11.598

10.  pH and kinetic isotope effects on the reductive half-reaction of D-amino acid oxidase.

Authors:  J M Denu; P F Fitzpatrick
Journal:  Biochemistry       Date:  1992-09-08       Impact factor: 3.162

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  7 in total

1.  Experimental evidence for a hydride transfer mechanism in plant glycolate oxidase catalysis.

Authors:  Younès Dellero; Caroline Mauve; Edouard Boex-Fontvieille; Valérie Flesch; Mathieu Jossier; Guillaume Tcherkez; Michael Hodges
Journal:  J Biol Chem       Date:  2014-11-21       Impact factor: 5.157

2.  Crystallography Coupled with Kinetic Analysis Provides Mechanistic Underpinnings of a Nicotine-Degrading Enzyme.

Authors:  Margarita A Tararina; Song Xue; Lauren C Smith; Samantha N Muellers; Pedro O Miranda; Kim D Janda; Karen N Allen
Journal:  Biochemistry       Date:  2018-06-13       Impact factor: 3.162

3.  Kinetic and isotopic characterization of L-proline dehydrogenase from Mycobacterium tuberculosis.

Authors:  Hector Serrano; John S Blanchard
Journal:  Biochemistry       Date:  2013-07-08       Impact factor: 3.162

4.  Characterization of active site residues of nitroalkane oxidase.

Authors:  Michael P Valley; Nana S Fenny; Shah R Ali; Paul F Fitzpatrick
Journal:  Bioorg Chem       Date:  2009-12-28       Impact factor: 5.275

5.  Probing the role of active site residues in NikD, an unusual amino acid oxidase that catalyzes an aromatization reaction important in nikkomycin biosynthesis.

Authors:  Phaneeswara-Rao Kommoju; Robert C Bruckner; Patricia Ferreira; Marilyn Schuman Jorns
Journal:  Biochemistry       Date:  2009-07-28       Impact factor: 3.162

6.  Use of pH and kinetic isotope effects to establish chemistry as rate-limiting in oxidation of a peptide substrate by LSD1.

Authors:  Helena Gaweska; Michelle Henderson Pozzi; Dawn M Z Schmidt; Dewey G McCafferty; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2009-06-16       Impact factor: 3.162

7.  pH dependence of a mammalian polyamine oxidase: insights into substrate specificity and the role of lysine 315.

Authors:  Michelle Henderson Pozzi; Vijay Gawandi; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2009-02-24       Impact factor: 3.162

  7 in total

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