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Literature DB >> 17031529

Random sampling of evolution time space and Fourier transform processing.

Krzysztof Kazimierczuk¹, Anna Zawadzka, Wiktor Koźmiński, Igor Zhukov.

Abstract

Application of Fourier Transform for processing 3D NMR spectra with random sampling of evolution time space is presented. The 2D FT is calculated for pairs of frequencies, instead of conventional sequence of one-dimensional transforms. Signal to noise ratios and linewidths for different random distributions were investigated by simulations and experiments. The experimental examples include 3D HNCA, HNCACB and (15)N-edited NOESY-HSQC spectra of (13)C (15)N labeled ubiquitin sample. Obtained results revealed general applicability of proposed method and the significant improvement of resolution in comparison with conventional spectra recorded in the same time.

Mesh：

Year: 2006 PMID： 17031529 DOI： 10.1007/s10858-006-9077-y

Source DB: PubMed Journal: J Biomol NMR ISSN： 0925-2738 Impact factor: 2.835

24 in total

1. Non-uniformly sampled double-TROSY hNcaNH experiments for NMR sequential assignments of large proteins.

Authors: Dominique P Frueh; Zhen-Yu J Sun; David A Vosburg; Christopher T Walsh; Jeffrey C Hoch; Gerhard Wagner
Journal: J Am Chem Soc Date: 2006-05-03 Impact factor: 15.419

2. Novel 2D triple-resonance NMR experiments for sequential resonance assignments of proteins.

Authors: Keyang Ding; Angela M Gronenborn
Journal: J Magn Reson Date: 2002-06 Impact factor: 2.229

3. Generalized reconstruction of n-D NMR spectra from multiple projections: application to the 5-D HACACONH spectrum of protein G B1 domain.

Authors: Brian E Coggins; Ronald A Venters; Pei Zhou
Journal: J Am Chem Soc Date: 2004-02-04 Impact factor: 15.419

4. New methods for fast multidimensional NMR.

Authors: Ray Freeman; Eriks Kupce
Journal: J Biomol NMR Date: 2003-10 Impact factor: 2.835

5. Accelerated acquisition of high resolution triple-resonance spectra using non-uniform sampling and maximum entropy reconstruction.

Authors: David Rovnyak; Dominique P Frueh; Mallika Sastry; Zhen-Yu J Sun; Alan S Stern; Jeffrey C Hoch; Gerhard Wagner
Journal: J Magn Reson Date: 2004-09 Impact factor: 2.229

6. Fast reconstruction of four-dimensional NMR spectra from plane projections.

Authors: Eriks Kupce; Ray Freeman
Journal: J Biomol NMR Date: 2004-04 Impact factor: 2.835

7. High-resolution iterative frequency identification for NMR as a general strategy for multidimensional data collection.

Authors: Hamid R Eghbalnia; Arash Bahrami; Marco Tonelli; Klaas Hallenga; John L Markley
Journal: J Am Chem Soc Date: 2005-09-14 Impact factor: 15.419

8. Signal identification in NMR spectra with coupled evolution periods.

Authors: Daniel Malmodin; Martin Billeter
Journal: J Magn Reson Date: 2005-09 Impact factor: 2.229

9. Fast acquisition of NMR spectra using Fourier transform of non-equispaced data.

Authors: Dominique Marion
Journal: J Biomol NMR Date: 2005-06 Impact factor: 2.835

10. Optimization of resolution and sensitivity of 4D NOESY using multi-dimensional decomposition.

Authors: T Luan; V Jaravine; A Yee; C H Arrowsmith; V Yu Orekhov
Journal: J Biomol NMR Date: 2005-09 Impact factor: 2.835

50 in total

Review 1. Radial sampling for fast NMR: Concepts and practices over three decades.

Authors: Brian E Coggins; Ronald A Venters; Pei Zhou
Journal: Prog Nucl Magn Reson Spectrosc Date: 2010-07-30 Impact factor: 9.795

2. NMR protein structure determination in living E. coli cells using nonlinear sampling.

Authors: Teppei Ikeya; Atsuko Sasaki; Daisuke Sakakibara; Yoshiki Shigemitsu; Junpei Hamatsu; Tomomi Hanashima; Masaki Mishima; Masatoshi Yoshimasu; Nobuhiro Hayashi; Tsutomu Mikawa; Daniel Nietlispach; Markus Wälchli; Brian O Smith; Masahiro Shirakawa; Peter Güntert; Yutaka Ito
Journal: Nat Protoc Date: 2010-05-13 Impact factor: 13.491

3. Sparsely sampled high-resolution 4-D experiments for efficient backbone resonance assignment of disordered proteins.

Authors: Jie Wen; Jihui Wu; Pei Zhou
Journal: J Magn Reson Date: 2011-01-04 Impact factor: 2.229

4. Random phase detection in multidimensional NMR.

Authors: Mark W Maciejewski; Matthew Fenwick; Adam D Schuyler; Alan S Stern; Vitaliy Gorbatyuk; Jeffrey C Hoch
Journal: Proc Natl Acad Sci U S A Date: 2011-09-26 Impact factor: 11.205

5. Speeding up sequence specific assignment of IDPs.

Authors: Wolfgang Bermel; Ivano Bertini; Isabella C Felli; Leonardo Gonnelli; Wiktor Koźmiński; Alessandro Piai; Roberta Pierattelli; Jan Stanek
Journal: J Biomol NMR Date: 2012-06-10 Impact factor: 2.835

6. HA-detected experiments for the backbone assignment of intrinsically disordered proteins.

Authors: Sampo Mäntylahti; Olli Aitio; Maarit Hellman; Perttu Permi
Journal: J Biomol NMR Date: 2010-05-01 Impact factor: 2.835

7. Iterative algorithm of discrete Fourier transform for processing randomly sampled NMR data sets.

Authors: Jan Stanek; Wiktor Koźmiński
Journal: J Biomol NMR Date: 2010-04-07 Impact factor: 2.835

8. Strategy for complete NMR assignment of disordered proteins with highly repetitive sequences based on resolution-enhanced 5D experiments.

Authors: Veronika Motáčková; Jiří Nováček; Anna Zawadzka-Kazimierczuk; Krzysztof Kazimierczuk; Lukáš Zídek; Hana Sanderová; Libor Krásný; Wiktor Koźmiński; Vladimír Sklenář
Journal: J Biomol NMR Date: 2010-10-02 Impact factor: 2.835

9. SEnD NMR: sensitivity enhanced n-dimensional NMR.

Authors: John M Gledhill; A Joshua Wand
Journal: J Magn Reson Date: 2009-11-18 Impact factor: 2.229

10. High resolution 4-D spectroscopy with sparse concentric shell sampling and FFT-CLEAN.

Authors: Brian E Coggins; Pei Zhou
Journal: J Biomol NMR Date: 2008-10-14 Impact factor: 2.835