Literature DB >> 14746450

Generalized reconstruction of n-D NMR spectra from multiple projections: application to the 5-D HACACONH spectrum of protein G B1 domain.

Brian E Coggins1, Ronald A Venters, Pei Zhou.   

Abstract

Reconstructing multidimensional NMR spectra from 2-D projections significantly reduces the time needed for data collection over conventional methodology. Here, we provide a generalization of the projection-reconstruction process to spectra of arbitrary dimensionality, using a concept of coordinate rotation to produce explicit expressions for reconstruction. These expressions allow one to reconstruct subsets of the higher dimensionality space without producing the full spectrum, permitting convenient analysis of the data. We demonstrate the effectiveness of these procedures in the reconstruction of the 5-D HACACONH spectrum of protein G B1 domain from 12 2-D projections collected in five experiments. We further demonstrate that the base spectra of GFT-NMR are equivalent to projections of the 5-D spectrum at fixed angles.

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Year:  2004        PMID: 14746450     DOI: 10.1021/ja039430q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  13 in total

Review 1.  Radial sampling for fast NMR: Concepts and practices over three decades.

Authors:  Brian E Coggins; Ronald A Venters; Pei Zhou
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-07-30       Impact factor: 9.795

2.  Addressing the overlap problem in the quantitative analysis of two dimensional NMR spectra: application to (15)N relaxation measurements.

Authors:  Vitali Tugarinov; Wing-Yiu Choy; Eriks Kupce; Lewis E Kay
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

3.  PR-CALC: a program for the reconstruction of NMR spectra from projections.

Authors:  Brian E Coggins; Pei Zhou
Journal:  J Biomol NMR       Date:  2006-03       Impact factor: 2.835

4.  Random sampling of evolution time space and Fourier transform processing.

Authors:  Krzysztof Kazimierczuk; Anna Zawadzka; Wiktor Koźmiński; Igor Zhukov
Journal:  J Biomol NMR       Date:  2006-09-21       Impact factor: 2.835

5.  Sampling of the NMR time domain along concentric rings.

Authors:  Brian E Coggins; Pei Zhou
Journal:  J Magn Reson       Date:  2006-10-27       Impact factor: 2.229

6.  A six-dimensional alpha proton detection-based APSY experiment for backbone assignment of intrinsically disordered proteins.

Authors:  Xuejun Yao; Stefan Becker; Markus Zweckstetter
Journal:  J Biomol NMR       Date:  2014-11-04       Impact factor: 2.835

7.  Nonuniform sampling of hypercomplex multidimensional NMR experiments: Dimensionality, quadrature phase and randomization.

Authors:  Adam D Schuyler; Mark W Maciejewski; Alan S Stern; Jeffrey C Hoch
Journal:  J Magn Reson       Date:  2015-03-10       Impact factor: 2.229

8.  Fast acquisition of high resolution 4-D amide-amide NOESY with diagonal suppression, sparse sampling and FFT-CLEAN.

Authors:  Jon W Werner-Allen; Brian E Coggins; Pei Zhou
Journal:  J Magn Reson       Date:  2010-02-21       Impact factor: 2.229

9.  Clean absorption-mode NMR data acquisition.

Authors:  Yibing Wu; Arindam Ghosh; Thomas Szyperski
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

10.  High resolution 4-D spectroscopy with sparse concentric shell sampling and FFT-CLEAN.

Authors:  Brian E Coggins; Pei Zhou
Journal:  J Biomol NMR       Date:  2008-10-14       Impact factor: 2.835

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