Literature DB >> 20004602

SEnD NMR: sensitivity enhanced n-dimensional NMR.

John M Gledhill1, A Joshua Wand.   

Abstract

Sparse sampling offers tremendous potential for overcoming the time limitations imposed by traditional Cartesian sampling of indirectly detected dimensions of multidimensional NMR data. However, in many instances sensitivity rather than time remains of foremost importance when collecting data on protein samples. Here we explore how to optimize the collection of radial sampled multidimensional NMR data to achieve maximal signal-to-noise. A method is presented that exploits a rigorous definition of the minimal set of radial sampling angles required to resolve all peaks of interest in combination with a fundamental statistical property of radial sampled data. The approach appears general and can achieve a substantial sensitivity advantage over Cartesian sampling for the same total data acquisition time. Termed Sensitivity Enhanced n-Dimensional or SEnD NMR, the method involves three basic steps. First, data collection is optimized using routines to determine a minimal set of radial sampling angles required to resolve frequencies in the radially sampled chemical shift evolution dimensions. Second, appropriate combinations of experimental parameters (transients and increments) are defined by simple statistical considerations in order to optimize signal-to-noise in single angle frequency domain spectra. Finally, the data is processed with a direct multidimensional Fourier transform and a statistical artifact and noise removal step is employed. Copyright 2009 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 20004602      PMCID: PMC2818751          DOI: 10.1016/j.jmr.2009.11.005

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  18 in total

1.  High-resolution iterative frequency identification for NMR as a general strategy for multidimensional data collection.

Authors:  Hamid R Eghbalnia; Arash Bahrami; Marco Tonelli; Klaas Hallenga; John L Markley
Journal:  J Am Chem Soc       Date:  2005-09-14       Impact factor: 15.419

2.  Multiway decomposition of NMR spectra with coupled evolution periods.

Authors:  Daniel Malmodin; Martin Billeter
Journal:  J Am Chem Soc       Date:  2005-10-05       Impact factor: 15.419

3.  (4,2)D Projection--reconstruction experiments for protein backbone assignment: application to human carbonic anhydrase II and calbindin D(28K).

Authors:  Ronald A Venters; Brian E Coggins; Doug Kojetin; John Cavanagh; Pei Zhou
Journal:  J Am Chem Soc       Date:  2005-06-22       Impact factor: 15.419

4.  Automated projection spectroscopy (APSY).

Authors:  Sebastian Hiller; Francesco Fiorito; Kurt Wüthrich; Gerhard Wider
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-25       Impact factor: 11.205

5.  Deterministic and statistical methods for reconstructing multidimensional NMR spectra.

Authors:  Ji Won Yoon; Simon Godsill; Eriks Kupce; Ray Freeman
Journal:  Magn Reson Chem       Date:  2006-03       Impact factor: 2.447

6.  Sampling of the NMR time domain along concentric rings.

Authors:  Brian E Coggins; Pei Zhou
Journal:  J Magn Reson       Date:  2006-10-27       Impact factor: 2.229

7.  Optimized 3D-NMR sampling for resonance assignment of partially unfolded proteins.

Authors:  Nicolas Pannetier; Klaartje Houben; Laurence Blanchard; Dominique Marion
Journal:  J Magn Reson       Date:  2007-01-23       Impact factor: 2.229

8.  High resolution 4-D spectroscopy with sparse concentric shell sampling and FFT-CLEAN.

Authors:  Brian E Coggins; Pei Zhou
Journal:  J Biomol NMR       Date:  2008-10-14       Impact factor: 2.835

9.  Optimized angle selection for radial sampled NMR experiments.

Authors:  John M Gledhill; A Joshua Wand
Journal:  J Magn Reson       Date:  2008-09-11       Impact factor: 2.229

10.  Internal dynamics of human ubiquitin revealed by 13C-relaxation studies of randomly fractionally labeled protein.

Authors:  A J Wand; J L Urbauer; R P McEvoy; R J Bieber
Journal:  Biochemistry       Date:  1996-05-14       Impact factor: 3.162

View more
  2 in total

1.  Optimized linear prediction for radial sampled multidimensional NMR experiments.

Authors:  John M Gledhill; Vignesh Kasinath; A Joshua Wand
Journal:  J Magn Reson       Date:  2011-06-28       Impact factor: 2.229

2.  Al NMR: a novel NMR data processing program optimized for sparse sampling.

Authors:  John M Gledhill; A Joshua Wand
Journal:  J Biomol NMR       Date:  2011-11-15       Impact factor: 2.835

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.