Literature DB >> 15972264

Signal identification in NMR spectra with coupled evolution periods.

Daniel Malmodin1, Martin Billeter.   

Abstract

Novel multidimensional NMR experiments rely on modified time-domain sampling schemes to provide significant savings of experimental time. Several approaches are based on the coupling of evolution times resulting in a reduction of the dimensionality of the recorded spectra, and a concomitant saving of experimental time. We present a consistent and general tool, called EVOCOUP, for the analysis of these reduced dimensionality spectra. The approach is flexible in the sense that the input can consist of various forms of reduced dimensionality spectra, that any piece of information can be removed (provided enough information is left), e.g., signals undetectable due to poor signal-to-noise or covered by artifacts, and that it can be applied to spectra involving any number of nuclei. The use of a general optimization procedure and an appropriate target function provides for a robust approach with well-defined results and ensures optimal use of redundant information normally present in the input. Spectral overlap in the directly detected dimension is resolved in a fully automated manner, avoiding the assessment of signal quality and its use in combinatorial trials. The positions of all peaks in a corresponding full-dimensional spectrum are obtained without need for reconstruction of this spectrum. In a systematic analysis of a complete spectrum recorded for the 14 kDa protein azurin and involving five different nuclei, only four spin systems were missed and no false spins systems were detected.

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Year:  2005        PMID: 15972264     DOI: 10.1016/j.jmr.2005.05.020

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  11 in total

Review 1.  Radial sampling for fast NMR: Concepts and practices over three decades.

Authors:  Brian E Coggins; Ronald A Venters; Pei Zhou
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-07-30       Impact factor: 9.795

2.  Iterative algorithm of discrete Fourier transform for processing randomly sampled NMR data sets.

Authors:  Jan Stanek; Wiktor Koźmiński
Journal:  J Biomol NMR       Date:  2010-04-07       Impact factor: 2.835

3.  PR-CALC: a program for the reconstruction of NMR spectra from projections.

Authors:  Brian E Coggins; Pei Zhou
Journal:  J Biomol NMR       Date:  2006-03       Impact factor: 2.835

4.  Random sampling of evolution time space and Fourier transform processing.

Authors:  Krzysztof Kazimierczuk; Anna Zawadzka; Wiktor Koźmiński; Igor Zhukov
Journal:  J Biomol NMR       Date:  2006-09-21       Impact factor: 2.835

5.  Sampling of the NMR time domain along concentric rings.

Authors:  Brian E Coggins; Pei Zhou
Journal:  J Magn Reson       Date:  2006-10-27       Impact factor: 2.229

6.  Projected [(1)H, (15)N]-HMQC-[ (1)H, (1)H]-NOESY for large molecular systems: application to a 121 kDa protein-DNA complex.

Authors:  Veniamin Galius; Chrysoula Leontiou; Timothy Richmond; Gerhard Wider
Journal:  J Biomol NMR       Date:  2008-01-30       Impact factor: 2.835

7.  Analytical solution to the coupled evolution of multidimensional NMR data.

Authors:  Geoffrey A Mueller
Journal:  J Biomol NMR       Date:  2009-03-24       Impact factor: 2.835

8.  An improved ultrafast 2D NMR experiment: towards atom-resolved real-time studies of protein kinetics at multi-Hz rates.

Authors:  Maayan Gal; Thomas Kern; Paul Schanda; Lucio Frydman; Bernhard Brutscher
Journal:  J Biomol NMR       Date:  2008-11-04       Impact factor: 2.835

Review 9.  Biomolecular NMR data analysis.

Authors:  Michael R Gryk; Jay Vyas; Mark W Maciejewski
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05       Impact factor: 9.795

10.  High resolution 4-D spectroscopy with sparse concentric shell sampling and FFT-CLEAN.

Authors:  Brian E Coggins; Pei Zhou
Journal:  J Biomol NMR       Date:  2008-10-14       Impact factor: 2.835

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