Literature DB >> 16873127

Arrhenius curves of hydrogen transfers: tunnel effects, isotope effects and effects of pre-equilibria.

Hans-Heinrich Limbach1, Juan Miguel Lopez, Amnon Kohen.   

Abstract

In this paper, the Arrhenius curves of selected hydrogen-transfer reactions for which kinetic data are available in a large temperature range are reviewed. The curves are discussed in terms of the one-dimensional Bell-Limbach tunnelling model. The main parameters of this model are the barrier heights of the isotopic reactions, barrier width of the H-reaction, tunnelling masses, pre-exponential factor and minimum energy for tunnelling to occur. The model allows one to compare different reactions in a simple way and prepare the kinetic data for more-dimensional treatments. The first type of reactions is concerned with reactions where the geometries of the reacting molecules are well established and the kinetic data of the isotopic reactions are available in a large temperature range. Here, it is possible to study the relation between kinetic isotope effects (KIEs) and chemical structure. Examples are the tautomerism of porphyrin, the porphyrin anion and related compounds exhibiting intramolecular hydrogen bonds of medium strength. We observe pre-exponential factors of the order of kT/h congruent with 10(13) s-1 corresponding to vanishing activation entropies in terms of transition state theory. This result is important for the second type of reactions discussed in this paper, referring mostly to liquid solutions. Here, the reacting molecular configurations may be involved in equilibria with non- or less-reactive forms. Several cases are discussed, where the less-reactive forms dominate at low or at high temperature, leading to unusual Arrhenius curves. These cases include examples from small molecule solution chemistry like the base-catalysed intramolecular H-transfer in diaryltriazene, 2-(2'-hydroxyphenyl)-benzoxazole, 2-hydroxy-phenoxyl radicals, as well as in the case of an enzymatic system, thermophilic alcohol dehydrogenase. In the latter case, temperature-dependent KIEs are interpreted in terms of a transition between two regimes with different temperature-independent KIEs.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16873127      PMCID: PMC1647316          DOI: 10.1098/rstb.2006.1872

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  11 in total

1.  Convex Arrhenius plots and their interpretation.

Authors:  D Truhlar; A Kohen
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  Temperature-dependent isotope effects in soybean lipoxygenase-1: correlating hydrogen tunneling with protein dynamics.

Authors:  Michael J Knapp; Keith Rickert; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2002-04-17       Impact factor: 15.419

3.  Simulating large nuclear quantum mechanical corrections in hydrogen atom transfer reactions in metalloenzymes.

Authors:  Mats H M Olsson; Per E M Siegbahn; Arieh Warshel
Journal:  J Biol Inorg Chem       Date:  2003-12-09       Impact factor: 3.358

4.  Proton-coupled electron transfer in soybean lipoxygenase.

Authors:  Elizabeth Hatcher; Alexander V Soudackov; Sharon Hammes-Schiffer
Journal:  J Am Chem Soc       Date:  2004-05-12       Impact factor: 15.419

5.  Thermal-activated protein mobility and its correlation with catalysis in thermophilic alcohol dehydrogenase.

Authors:  Zhao-Xun Liang; Thomas Lee; Katheryn A Resing; Natalie G Ahn; Judith P Klinman
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-21       Impact factor: 11.205

6.  Simulations of the large kinetic isotope effect and the temperature dependence of the hydrogen atom transfer in lipoxygenase.

Authors:  Mats H M Olsson; Per E M Siegbahn; Arieh Warshel
Journal:  J Am Chem Soc       Date:  2004-03-10       Impact factor: 15.419

7.  Linking protein structure and dynamics to catalysis: the role of hydrogen tunnelling.

Authors:  Judith P Klinman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

Review 8.  Hydrogen tunneling in biology.

Authors:  A Kohen; J P Klinman
Journal:  Chem Biol       Date:  1999-07

9.  Enzyme dynamics and hydrogen tunnelling in a thermophilic alcohol dehydrogenase.

Authors:  A Kohen; R Cannio; S Bartolucci; J P Klinman
Journal:  Nature       Date:  1999-06-03       Impact factor: 49.962

10.  Dynamic NMR study of the mechanisms of double, triple, and quadruple proton and deuteron transfer in cyclic hydrogen bonded solids of pyrazole derivatives.

Authors:  Oliver Klein; Francisco Aguilar-Parrilla; Juan Miguel Lopez; Nadine Jagerovic; José Elguero; Hans-Heinrich Limbach
Journal:  J Am Chem Soc       Date:  2004-09-22       Impact factor: 15.419

View more
  23 in total

1.  Mechanism of the Swern oxidation: significant deviations from transition state theory.

Authors:  Thomas Giagou; Matthew P Meyer
Journal:  J Org Chem       Date:  2010-11-02       Impact factor: 4.354

2.  Measurement of the intramolecular isotope effect on aliphatic hydroxylation by Chromobacterium violaceum phenylalanine hydroxylase.

Authors:  Aram J Panay; Paul F Fitzpatrick
Journal:  J Am Chem Soc       Date:  2010-04-28       Impact factor: 15.419

3.  A 21st century revisionist's view at a turning point in enzymology.

Authors:  Zachary D Nagel; Judith P Klinman
Journal:  Nat Chem Biol       Date:  2009-08       Impact factor: 15.040

4.  Impaired protein conformational landscapes as revealed in anomalous Arrhenius prefactors.

Authors:  Zachary D Nagel; Ming Dong; Brian J Bahnson; Judith P Klinman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-13       Impact factor: 11.205

5.  Kinetics of low-temperature transitions and a reaction rate theory from non-equilibrium distributions.

Authors:  Vincenzo Aquilanti; Nayara Dantas Coutinho; Valter Henrique Carvalho-Silva
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2017-04-28       Impact factor: 4.226

6.  Identification of a long-range protein network that modulates active site dynamics in extremophilic alcohol dehydrogenases.

Authors:  Zachary D Nagel; Shujian Cun; Judith P Klinman
Journal:  J Biol Chem       Date:  2013-03-22       Impact factor: 5.157

Review 7.  VTST/MT studies of the catalytic mechanism of C-H activation by transition metal complexes with [Cu2(μ-O2)], [Fe2(μ-O2)] and Fe(IV)-O cores based on DFT potential energy surfaces.

Authors:  Yongho Kim; Binh Khanh Mai; Sumin Park
Journal:  J Biol Inorg Chem       Date:  2017-01-16       Impact factor: 3.358

8.  Kinetic isotope effects on aromatic and benzylic hydroxylation by Chromobacterium violaceum phenylalanine hydroxylase as probes of chemical mechanism and reactivity.

Authors:  Aram J Panay; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2008-09-26       Impact factor: 3.162

Review 9.  Relationship of femtosecond-picosecond dynamics to enzyme-catalyzed H-transfer.

Authors:  Christopher M Cheatum; Amnon Kohen
Journal:  Top Curr Chem       Date:  2013

10.  Temperature dependence of proton permeation through a voltage-gated proton channel.

Authors:  Miyuki Kuno; Hiroyuki Ando; Hirokazu Morihata; Hiromu Sakai; Hiroyuki Mori; Makoto Sawada; Shigetoshi Oiki
Journal:  J Gen Physiol       Date:  2009-09       Impact factor: 4.086

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.