Literature DB >> 24020836

A critical test of the "tunneling and coupled motion" concept in enzymatic alcohol oxidation.

Daniel Roston1, Amnon Kohen.   

Abstract

The physical mechanism of C-H bond activation by enzymes is the subject of intense study, and we have tested the predictions of two competing models for C-H activation in the context of alcohol dehydrogenase. The kinetic isotope effects (KIEs) in this enzyme have previously suggested a model of quantum mechanical tunneling and coupled motion of primary (1°) and secondary (2°) hydrogens. Here we measure the 2° H/T KIEs with both H and D at the 1° position and find that the 2° KIE is significantly deflated with D-transfer, consistent with the predictions of recent Marcus-like models of H-transfer. The results suggest that the fast dynamics of H-tunneling result in a 1° isotope effect on the structure of the tunneling ready state: the trajectory of D-transfer goes through a shorter donor-acceptor distance than that of H-transfer.

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Year:  2013        PMID: 24020836      PMCID: PMC3818283          DOI: 10.1021/ja405917m

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  22 in total

1.  Temperature-dependent isotope effects in soybean lipoxygenase-1: correlating hydrogen tunneling with protein dynamics.

Authors:  Michael J Knapp; Keith Rickert; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2002-04-17       Impact factor: 15.419

2.  Elusive transition state of alcohol dehydrogenase unveiled.

Authors:  Daniel Roston; Amnon Kohen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

3.  Linking protein structure and dynamics to catalysis: the role of hydrogen tunnelling.

Authors:  Judith P Klinman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

Review 4.  Hydrogen tunneling in biology.

Authors:  A Kohen; J P Klinman
Journal:  Chem Biol       Date:  1999-07

5.  Enzyme dynamics and hydrogen tunnelling in a thermophilic alcohol dehydrogenase.

Authors:  A Kohen; R Cannio; S Bartolucci; J P Klinman
Journal:  Nature       Date:  1999-06-03       Impact factor: 49.962

6.  Boundary conditions for the Swain-Schaad relationship as a criterion for hydrogen tunneling.

Authors:  Amnon Kohen; Jan H Jensen
Journal:  J Am Chem Soc       Date:  2002-04-17       Impact factor: 15.419

Review 7.  Hydrogen tunneling and protein motion in enzyme reactions.

Authors:  Sharon Hammes-Schiffer
Journal:  Acc Chem Res       Date:  2006-02       Impact factor: 22.384

8.  Role of internal thermodynamics in determining hydrogen tunneling in enzyme-catalyzed hydrogen transfer reactions.

Authors:  J Rucker; Y Cha; T Jonsson; K L Grant; J P Klinman
Journal:  Biochemistry       Date:  1992-11-24       Impact factor: 3.162

9.  Alpha-secondary isotope effects as probes of "tunneling-ready" configurations in enzymatic H-tunneling: insight from environmentally coupled tunneling models.

Authors:  Christopher R Pudney; Sam Hay; Michael J Sutcliffe; Nigel S Scrutton
Journal:  J Am Chem Soc       Date:  2006-11-01       Impact factor: 15.419

10.  Isotope effects as probes for enzyme catalyzed hydrogen-transfer reactions.

Authors:  Daniel Roston; Zahidul Islam; Amnon Kohen
Journal:  Molecules       Date:  2013-05-14       Impact factor: 4.411

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  13 in total

Review 1.  Path Sampling Methods for Enzymatic Quantum Particle Transfer Reactions.

Authors:  M W Dzierlenga; M J Varga; S D Schwartz
Journal:  Methods Enzymol       Date:  2016-06-16       Impact factor: 1.600

2.  Preserved hydride transfer mechanism in evolutionarily divergent thymidylate synthases.

Authors:  Thelma Abeysinghe; Baoyu Hong; Zhen Wang; Amnon Kohen
Journal:  Curr Top Biochem Res       Date:  2016

3.  Stereospecific multiple isotopic labeling of benzyl alcohol.

Authors:  Daniel Roston; Amnon Kohen
Journal:  J Labelled Comp Radiopharm       Date:  2013-12-11       Impact factor: 1.921

4.  Leaving Group Ability Observably Affects Transition State Structure in a Single Enzyme Active Site.

Authors:  Daniel Roston; Darren Demapan; Qiang Cui
Journal:  J Am Chem Soc       Date:  2016-06-02       Impact factor: 15.419

5.  Substrate and Transition State Binding in Alkaline Phosphatase Analyzed by Computation of Oxygen Isotope Effects.

Authors:  Daniel Roston; Qiang Cui
Journal:  J Am Chem Soc       Date:  2016-08-31       Impact factor: 15.419

6.  Another Look at the Mechanisms of Hydride Transfer Enzymes with Quantum and Classical Transition Path Sampling.

Authors:  Michael W Dzierlenga; Dimitri Antoniou; Steven D Schwartz
Journal:  J Phys Chem Lett       Date:  2015-03-19       Impact factor: 6.475

Review 7.  Kinetic isotope effects as a probe of hydrogen transfers to and from common enzymatic cofactors.

Authors:  Daniel Roston; Zahidul Islam; Amnon Kohen
Journal:  Arch Biochem Biophys       Date:  2013-10-22       Impact factor: 4.013

8.  Primary Deuterium Kinetic Isotope Effects: A Probe for the Origin of the Rate Acceleration for Hydride Transfer Catalyzed by Glycerol-3-Phosphate Dehydrogenase.

Authors:  Archie C Reyes; Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2018-07-10       Impact factor: 3.162

9.  Computational replication of the abnormal secondary kinetic isotope effects in a hydride transfer reaction in solution with a motion assisted H-tunneling model.

Authors:  Sadra Kashefolgheta; Mortezaali Razzaghi; Blake Hammann; James Eilers; Daniel Roston; Yun Lu
Journal:  J Org Chem       Date:  2014-02-17       Impact factor: 4.354

10.  Exploring the reversal of enantioselectivity on a zinc-dependent alcohol dehydrogenase.

Authors:  Miguel A Maria-Solano; Adrian Romero-Rivera; Sílvia Osuna
Journal:  Org Biomol Chem       Date:  2017-05-16       Impact factor: 3.876

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