Literature DB >> 16734453

Thermodynamic analysis of autonomous parallel beta-sheet formation in water.

John D Fisk1, Margaret A Schmitt, Samuel H Gellman.   

Abstract

We report the first thermodynamic analysis of parallel beta-sheet formation in a model system that folds in aqueous solution. NMR chemical shifts were used to determine beta-sheet population, and van't Hoff anaysis provided thermodynamic parameters. Our approach relies upon the d-prolyl-1,1-dimethyl-1,2-diaminoethane unit to promote parallel beta-sheet formation between attached peptide strands. The development of a macrocyclic reference molecule to provide chemical shift data for the fully folded state was crucial to the quantitative anaylsis.

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Year:  2006        PMID： 16734453      PMCID： PMC2723805          DOI： 10.1021/ja060942p

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN： 0002-7863            Impact factor:   15.419


  15 in total

1.  The nucleation of monomeric parallel beta-sheet-like structures and their self-assembly in aqueous solution.

Authors:  P Chitnumsub; W R Fiori; H A Lashuel; H Diaz; J W Kelly
Journal:  Bioorg Med Chem       Date:  1999-01       Impact factor: 3.641

2.  A Designed beta-Hairpin Containing a Natural Hydrophobic Cluster This research was supported by the National Science Foundation (CHE-9820952). J.F.E. was supported by a fellowship from the Ministerio de Educacion y Cultura (Spain) and the Fulbright Commission. The mass spectrometer was purchased in part with a National Science Foundation grant (CHE-9520868), and the NMR spectrometers were purchased in part with a National Institute Of Health grant (1 S10 RR04981). The CD spectrometer and analytical ultracentrifuge are part of the UW Biophysics Instrumentation Facility (NSF BIR-9512577).

Authors: 
Journal:  Angew Chem Int Ed Engl       Date:  2000-07-03       Impact factor: 15.336

3.  A parallel beta-sheet model system that folds in water.

Authors:  J D Fisk; S H Gellman
Journal:  J Am Chem Soc       Date:  2001-01-17       Impact factor: 15.419

4.  Enhanced hairpin stability through loop design: the case of the protein G B1 domain hairpin.

Authors:  R Matthew Fesinmeyer; F Michael Hudson; Niels H Andersen
Journal:  J Am Chem Soc       Date:  2004-06-16       Impact factor: 15.419

Review 5.  Design of beta-sheet systems for understanding the thermodynamics and kinetics of protein folding.

Authors:  Mark S Searle; Barbara Ciani
Journal:  Curr Opin Struct Biol       Date:  2004-08       Impact factor: 6.809

6.  The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy.

Authors:  D S Wishart; B D Sykes; F M Richards
Journal:  Biochemistry       Date:  1992-02-18       Impact factor: 3.162

7.  The dependence of amino acid pair correlations on structural environment.

Authors:  A P Cootes; P M Curmi; R Cunningham; C Donnelly; A E Torda
Journal:  Proteins       Date:  1998-08-01

8.  De novo design and structural analysis of a model beta-hairpin peptide system.

Authors:  M Ramírez-Alvarado; F J Blanco; L Serrano
Journal:  Nat Struct Biol       Date:  1996-07

Review 9.  Stability of alpha-helices.

Authors:  A Chakrabartty; R L Baldwin
Journal:  Adv Protein Chem       Date:  1995

10.  Tryptophan zippers: stable, monomeric beta -hairpins.

Authors:  A G Cochran; N J Skelton; M A Starovasnik
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-01       Impact factor: 11.205
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  11 in total

1.  Parallel β-sheet secondary structure is stabilized and terminated by interstrand disulfide cross-linking.

Authors:  Aaron M Almeida; Rebecca Li; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2011-12-13       Impact factor: 15.419

2.  Impact of strand length on the stability of parallel-β-sheet secondary structure.

Authors:  Felix Freire; Aaron M Almeida; John D Fisk; Jay D Steinkruger; Samuel H Gellman
Journal:  Angew Chem Int Ed Engl       Date:  2011-08-02       Impact factor: 15.336

3.  Protein folding, misfolding and aggregation: The importance of two-electron stabilizing interactions.

Authors:  Andrzej Stanisław Cieplak
Journal:  PLoS One       Date:  2017-09-18       Impact factor: 3.240

4.  Toward a Soluble Model System for the Amyloid State.

Authors:  Nicole C Thomas; Gail J Bartlett; Derek N Woolfson; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2017-11-08       Impact factor: 15.419

5.  Macrocyclic design strategies for small, stable parallel beta-sheet scaffolds.

Authors:  Felix Freire; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2009-06-17       Impact factor: 15.419

6.  An artificial beta-sheet that dimerizes through parallel beta-sheet interactions.

Authors:  Sergiy Levin; James S Nowick
Journal:  J Am Chem Soc       Date:  2007-10-06       Impact factor: 15.419

7.  Diacid linkers that promote parallel beta-sheet secondary structure in water.

Authors:  Felix Freire; John D Fisk; Aaron J Peoples; Monika Ivancic; Ilia A Guzei; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2008-05-29       Impact factor: 15.419

8.  Characterization of Parallel β-Sheets at Interfaces by Chiral Sum Frequency Generation Spectroscopy.

Authors:  Li Fu; Zhuguang Wang; Brian T Psciuk; Dequan Xiao; Victor S Batista; Elsa C Y Yan
Journal:  J Phys Chem Lett       Date:  2015-03-27       Impact factor: 6.475

9.  Parallel β-sheet vibrational couplings revealed by 2D IR spectroscopy of an isotopically labeled macrocycle: quantitative benchmark for the interpretation of amyloid and protein infrared spectra.

Authors:  Ann Marie Woys; Aaron M Almeida; Lu Wang; Chi-Cheng Chiu; Michael McGovern; Juan J de Pablo; James L Skinner; Samuel H Gellman; Martin T Zanni
Journal:  J Am Chem Soc       Date:  2012-11-09       Impact factor: 15.419

Review 10.  Artificial beta-sheets: chemical models of beta-sheets.

Authors:  Omid Khakshoor; James S Nowick
Journal:  Curr Opin Chem Biol       Date:  2008-09-05       Impact factor: 8.822
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