Literature DB >> 19456161

Macrocyclic design strategies for small, stable parallel beta-sheet scaffolds.

Felix Freire1, Samuel H Gellman.   

Abstract

Pairs of short peptide strands can be induced to adopt an antiparallel beta-sheet secondary structure in aqueous solution via a macrocyclic constraint, as illustrated by many natural and designed peptides. We show that an analogous strategy is successful for creation of small units of parallel beta-sheet secondary structure in aqueous solution. Cyclization in this case requires nonpeptide segments for N-to-N and C-to-C interstrand linkage. Surprisingly, we find that only one of these segments needs to be preorganized.

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Year:  2009        PMID: 19456161      PMCID: PMC2723809          DOI: 10.1021/ja902210f

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  26 in total

Review 1.  The design of linear peptides that fold as monomeric beta-sheet structures.

Authors:  E Lacroix; T Kortemme; M Lopez de la Paz; L Serrano
Journal:  Curr Opin Struct Biol       Date:  1999-08       Impact factor: 6.809

2.  The nucleation of monomeric parallel beta-sheet-like structures and their self-assembly in aqueous solution.

Authors:  P Chitnumsub; W R Fiori; H A Lashuel; H Diaz; J W Kelly
Journal:  Bioorg Med Chem       Date:  1999-01       Impact factor: 3.641

Review 3.  Design of beta-sheet systems for understanding the thermodynamics and kinetics of protein folding.

Authors:  Mark S Searle; Barbara Ciani
Journal:  Curr Opin Struct Biol       Date:  2004-08       Impact factor: 6.809

4.  The dependence of amino acid pair correlations on structural environment.

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Journal:  Proteins       Date:  1998-08-01

5.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

Review 6.  Stability of alpha-helices.

Authors:  A Chakrabartty; R L Baldwin
Journal:  Adv Protein Chem       Date:  1995

7.  Protegrins: leukocyte antimicrobial peptides that combine features of corticostatic defensins and tachyplesins.

Authors:  V N Kokryakov; S S Harwig; E A Panyutich; A A Shevchenko; G M Aleshina; O V Shamova; H A Korneva; R I Lehrer
Journal:  FEBS Lett       Date:  1993-07-26       Impact factor: 4.124

8.  Tachyplesin, a class of antimicrobial peptide from the hemocytes of the horseshoe crab (Tachypleus tridentatus). Isolation and chemical structure.

Authors:  T Nakamura; H Furunaka; T Miyata; F Tokunaga; T Muta; S Iwanaga; M Niwa; T Takao; Y Shimonishi
Journal:  J Biol Chem       Date:  1988-11-15       Impact factor: 5.157

Review 9.  Artificial beta-sheets: chemical models of beta-sheets.

Authors:  Omid Khakshoor; James S Nowick
Journal:  Curr Opin Chem Biol       Date:  2008-09-05       Impact factor: 8.822

10.  Channels in the gramicidin S-with-urea structure and their possible relation to transmembrane ion transport.

Authors:  G N Tishchenko; V I Andrianov; B K Vainstein; M M Woolfson; E Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-03-01
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  12 in total

1.  Parallel β-sheet secondary structure is stabilized and terminated by interstrand disulfide cross-linking.

Authors:  Aaron M Almeida; Rebecca Li; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2011-12-13       Impact factor: 15.419

2.  Impact of strand length on the stability of parallel-β-sheet secondary structure.

Authors:  Felix Freire; Aaron M Almeida; John D Fisk; Jay D Steinkruger; Samuel H Gellman
Journal:  Angew Chem Int Ed Engl       Date:  2011-08-02       Impact factor: 15.336

3.  Structure-Property Relationship Study of N-(Hydroxy)Peptides for the Design of Self-Assembled Parallel β-Sheets.

Authors:  Alexis D Richaud; Stéphane P Roche
Journal:  J Org Chem       Date:  2020-09-17       Impact factor: 4.354

4.  Giant macrolactams based on β-sheet peptides.

Authors:  Pin-Nan Cheng; James S Nowick
Journal:  J Org Chem       Date:  2011-04-15       Impact factor: 4.354

Review 5.  Systematic Targeting of Protein-Protein Interactions.

Authors:  Ashley E Modell; Sarah L Blosser; Paramjit S Arora
Journal:  Trends Pharmacol Sci       Date:  2016-06-04       Impact factor: 14.819

6.  Parallel β-sheet vibrational couplings revealed by 2D IR spectroscopy of an isotopically labeled macrocycle: quantitative benchmark for the interpretation of amyloid and protein infrared spectra.

Authors:  Ann Marie Woys; Aaron M Almeida; Lu Wang; Chi-Cheng Chiu; Michael McGovern; Juan J de Pablo; James L Skinner; Samuel H Gellman; Martin T Zanni
Journal:  J Am Chem Soc       Date:  2012-11-09       Impact factor: 15.419

7.  Covalent Linkage and Macrocylization Preserve and Enhance Synergistic Interactions in Catalytic Amyloids.

Authors:  Zsofia Lengyel-Zhand; Liam R Marshall; Maximilian Jung; Megha Jayachandran; Min-Chul Kim; Austin Kriews; Olga V Makhlynets; H Christopher Fry; Armin Geyer; Ivan V Korendovych
Journal:  Chembiochem       Date:  2020-11-06       Impact factor: 3.164

Review 8.  Structure-Based Design of Inhibitors of Protein-Protein Interactions: Mimicking Peptide Binding Epitopes.

Authors:  Marta Pelay-Gimeno; Adrian Glas; Oliver Koch; Tom N Grossmann
Journal:  Angew Chem Int Ed Engl       Date:  2015-06-26       Impact factor: 15.336

9.  Anatomy of β-strands at protein-protein interfaces.

Authors:  Andrew M Watkins; Paramjit S Arora
Journal:  ACS Chem Biol       Date:  2014-06-09       Impact factor: 5.100

Review 10.  Evolving a Peptide: Library Platforms and Diversification Strategies.

Authors:  Krištof Bozovičar; Tomaž Bratkovič
Journal:  Int J Mol Sci       Date:  2019-12-27       Impact factor: 5.923

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