Literature DB >> 11331745

Tryptophan zippers: stable, monomeric beta -hairpins.

A G Cochran1, N J Skelton, M A Starovasnik.   

Abstract

A structural motif, the tryptophan zipper (trpzip), greatly stabilizes the beta-hairpin conformation in short peptides. Peptides (12 or 16 aa in length) with four different turn sequences are monomeric and fold cooperatively in water, as has been observed previously for some hairpin peptides. However, the folding free energies of the trpzips exceed substantially those of all previously reported beta-hairpins and even those of some larger designed proteins. NMR structures of three of the trpzip peptides reveal exceptionally well-defined beta-hairpin conformations stabilized by cross-strand pairs of indole rings. The trpzips are the smallest peptides to adopt an unique tertiary fold without requiring metal binding, unusual amino acids, or disulfide crosslinks.

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Year:  2001        PMID: 11331745      PMCID: PMC33255          DOI: 10.1073/pnas.091100898

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

1.  A molecular dynamics study of the 41-56 beta-hairpin from B1 domain of protein G.

Authors:  D Roccatano; A Amadei; A Di Nola; H J Berendsen
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

2.  Thermodynamics of a beta-hairpin structure: evidence for cooperative formation of folding nucleus.

Authors:  S Honda; N Kobayashi; E Munekata
Journal:  J Mol Biol       Date:  2000-01-14       Impact factor: 5.469

3.  A Designed beta-Hairpin Containing a Natural Hydrophobic Cluster This research was supported by the National Science Foundation (CHE-9820952). J.F.E. was supported by a fellowship from the Ministerio de Educacion y Cultura (Spain) and the Fulbright Commission. The mass spectrometer was purchased in part with a National Science Foundation grant (CHE-9520868), and the NMR spectrometers were purchased in part with a National Institute Of Health grant (1 S10 RR04981). The CD spectrometer and analytical ultracentrifuge are part of the UW Biophysics Instrumentation Facility (NSF BIR-9512577).

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Journal:  Angew Chem Int Ed Engl       Date:  2000-07-03       Impact factor: 15.336

Review 4.  An evaluation of computational strategies for use in the determination of protein structure from distance constraints obtained by nuclear magnetic resonance.

Authors:  T F Havel
Journal:  Prog Biophys Mol Biol       Date:  1991       Impact factor: 3.667

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Authors:  T Kortemme; M Ramírez-Alvarado; L Serrano
Journal:  Science       Date:  1998-07-10       Impact factor: 47.728

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Journal:  Macromolecules       Date:  1976 May-Jun       Impact factor: 5.985

7.  De novo protein design: fully automated sequence selection.

Authors:  B I Dahiyat; S L Mayo
Journal:  Science       Date:  1997-10-03       Impact factor: 47.728

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Authors:  A S Yang; B Honig
Journal:  J Mol Biol       Date:  1995-09-22       Impact factor: 5.469

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Authors:  D L Minor; P S Kim
Journal:  Nature       Date:  1994-02-17       Impact factor: 49.962

10.  De novo protein design: towards fully automated sequence selection.

Authors:  B I Dahiyat; C A Sarisky; S L Mayo
Journal:  J Mol Biol       Date:  1997-11-07       Impact factor: 5.469

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  156 in total

1.  Combinatorial approaches: a new tool to search for highly structured beta-hairpin peptides.

Authors:  Maria Teresa Pastor; Manuela López de la Paz; Emmanuel Lacroix; Luis Serrano; Enrique Pérez-Payá
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-08       Impact factor: 11.205

2.  Natural beta-sheet proteins use negative design to avoid edge-to-edge aggregation.

Authors:  Jane S Richardson; David C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-05       Impact factor: 11.205

3.  Analysis of the factors that stabilize a designed two-stranded antiparallel beta-sheet.

Authors:  Juan F Espinosa; Faisal A Syud; Samuel H Gellman
Journal:  Protein Sci       Date:  2002-06       Impact factor: 6.725

4.  Stability of monomeric Cro variants: Isoenergetic transformation of a type I' to a type II' beta-hairpin by single amino acid replacements.

Authors:  A K M M Mollah; Rhonda L Stennis; Michael C Mossing
Journal:  Protein Sci       Date:  2003-05       Impact factor: 6.725

Review 5.  GRP94: An HSP90-like protein specialized for protein folding and quality control in the endoplasmic reticulum.

Authors:  Michal Marzec; Davide Eletto; Yair Argon
Journal:  Biochim Biophys Acta       Date:  2011-11-03

6.  The geometry and efficacy of cation-pi interactions in a diagonal position of a designed beta-hairpin.

Authors:  Chad D Tatko; Marcey L Waters
Journal:  Protein Sci       Date:  2003-11       Impact factor: 6.725

Review 7.  Combinatorial chemistry of beta-hairpins.

Authors:  M Teresa Pastor; Enrique Pérez-Payá
Journal:  Mol Divers       Date:  2003       Impact factor: 2.943

8.  A cross-strand Trp Trp pair stabilizes the hPin1 WW domain at the expense of function.

Authors:  Marcus Jäger; Maria Dendle; Amelia A Fuller; Jeffery W Kelly
Journal:  Protein Sci       Date:  2007-08-31       Impact factor: 6.725

9.  Further Optimization and Validation of the Classical Drude Polarizable Protein Force Field.

Authors:  Fang-Yu Lin; Jing Huang; Poonam Pandey; Chetan Rupakheti; Jing Li; Benoı T Roux; Alexander D MacKerell
Journal:  J Chem Theory Comput       Date:  2020-04-27       Impact factor: 6.006

10.  His26 protonation in cytochrome c triggers microsecond β-sheet formation and heme exposure: implications for apoptosis.

Authors:  Gurusamy Balakrishnan; Ying Hu; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2012-11-06       Impact factor: 15.419

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