Literature DB >> 15313241

Design of beta-sheet systems for understanding the thermodynamics and kinetics of protein folding.

Mark S Searle1, Barbara Ciani.   

Abstract

Peptide beta-sheet systems have emerged as context-independent models for probing secondary structure propensities, the nature and magnitude of stabilizing weak interactions, and aspects of cooperativity both parallel and perpendicular to the strand direction. These systems have allowed fundamental advances in understanding non-covalent interactions relevant to both chemical and biological systems, and in describing the protein folding energy landscape.

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Year:  2004        PMID: 15313241     DOI: 10.1016/j.sbi.2004.06.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  28 in total

1.  Kinetics and thermodynamics of type VIII beta-turn formation: a CD, NMR, and microsecond explicit molecular dynamics study of the GDNP tetrapeptide.

Authors:  Patrick F J Fuchs; Alexandre M J J Bonvin; Brigida Bochicchio; Antonietta Pepe; Alain J P Alix; Antonio M Tamburro
Journal:  Biophys J       Date:  2006-01-27       Impact factor: 4.033

2.  Thermodynamic analysis of autonomous parallel beta-sheet formation in water.

Authors:  John D Fisk; Margaret A Schmitt; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2006-06-07       Impact factor: 15.419

3.  Impact of strand length on the stability of parallel-β-sheet secondary structure.

Authors:  Felix Freire; Aaron M Almeida; John D Fisk; Jay D Steinkruger; Samuel H Gellman
Journal:  Angew Chem Int Ed Engl       Date:  2011-08-02       Impact factor: 15.336

4.  Structural characterization of triple transmembrane domain containing fragments of a yeast G protein-coupled receptor in an organic : aqueous environment by solution-state NMR spectroscopy.

Authors:  Katrina E Fracchiolla; Leah S Cohen; Boris Arshava; Martin Poms; Oliver Zerbe; Jeffrey M Becker; Fred Naider
Journal:  J Pept Sci       Date:  2015-02-02       Impact factor: 1.905

5.  Exploring beta-sheet structure and interactions with chemical model systems.

Authors:  James S Nowick
Journal:  Acc Chem Res       Date:  2008-09-18       Impact factor: 22.384

6.  Optimal salt bridge for Trp-cage stabilization.

Authors:  D Victoria Williams; Aimee Byrne; James Stewart; Niels H Andersen
Journal:  Biochemistry       Date:  2011-02-01       Impact factor: 3.162

7.  Crystal and NMR structures of a Trp-cage mini-protein benchmark for computational fold prediction.

Authors:  Michele Scian; Jasper C Lin; Isolde Le Trong; George I Makhatadze; Ronald E Stenkamp; Niels H Andersen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-16       Impact factor: 11.205

8.  A cross-strand Trp Trp pair stabilizes the hPin1 WW domain at the expense of function.

Authors:  Marcus Jäger; Maria Dendle; Amelia A Fuller; Jeffery W Kelly
Journal:  Protein Sci       Date:  2007-08-31       Impact factor: 6.725

9.  β-hairpin-mediated nucleation of polyglutamine amyloid formation.

Authors:  Karunakar Kar; Cody L Hoop; Kenneth W Drombosky; Matthew A Baker; Ravindra Kodali; Irene Arduini; Patrick C A van der Wel; W Seth Horne; Ronald Wetzel
Journal:  J Mol Biol       Date:  2013-01-23       Impact factor: 5.469

10.  Macrocyclic design strategies for small, stable parallel beta-sheet scaffolds.

Authors:  Felix Freire; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2009-06-17       Impact factor: 15.419

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