Literature DB >> 18775794

Artificial beta-sheets: chemical models of beta-sheets.

Omid Khakshoor1, James S Nowick.   

Abstract

Chemical models provide tools with which to simplify and study complicated biological systems. Forces and chemical processes that govern the structure, function, and interactions of a biomacromolecule can be explored with a simple, easy-to-study synthetic molecule. Chemical models of beta-sheet structures have helped to elucidate the factors influencing protein structures and functions. Chemical models that mimic beta-sheet quaternary structure and interactions are emerging as valuable tools with which to better understand and control protein recognition and protein aggregation.

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Year:  2008        PMID: 18775794      PMCID: PMC2646360          DOI: 10.1016/j.cbpa.2008.08.009

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  47 in total

Review 1.  Design of beta-sheet systems for understanding the thermodynamics and kinetics of protein folding.

Authors:  Mark S Searle; Barbara Ciani
Journal:  Curr Opin Struct Biol       Date:  2004-08       Impact factor: 6.809

2.  A new tool in peptide engineering: a photoswitchable stilbene-type beta-hairpin mimetic.

Authors:  Máté Erdélyi; Anders Karlén; Adolf Gogoll
Journal:  Chemistry       Date:  2005-12-23       Impact factor: 5.236

3.  Methyl-blocked dimeric alpha,gamma-peptide nanotube segments: formation of a peptide heterodimer through backbone-backbone interactions.

Authors:  Roberto J Brea; Manuel Amorín; Luis Castedo; Juan R Granja
Journal:  Angew Chem Int Ed Engl       Date:  2005-09-05       Impact factor: 15.336

Review 4.  Synthetic ion channels and pores (2004-2005).

Authors:  Adam L Sisson; Muhammad Raza Shah; Sheshanath Bhosale; Stefan Matile
Journal:  Chem Soc Rev       Date:  2006-05-18       Impact factor: 54.564

5.  Exploring beta-sheet structure and interactions with chemical model systems.

Authors:  James S Nowick
Journal:  Acc Chem Res       Date:  2008-09-18       Impact factor: 22.384

6.  Artificial beta-barrels.

Authors:  Naomi Sakai; Jiri Mareda; Stefan Matile
Journal:  Acc Chem Res       Date:  2008-07-01       Impact factor: 22.384

7.  A photocontrolled beta-hairpin peptide.

Authors:  Shou-Liang Dong; Markus Löweneck; Tobias E Schrader; Wolfgang J Schreier; Wolfgang Zinth; Luis Moroder; Christian Renner
Journal:  Chemistry       Date:  2006-01-23       Impact factor: 5.236

8.  Parallel assembly of dipolar columns composed of a stacked cyclic tri-beta-peptide.

Authors:  Futoshi Fujimura; Makoto Fukuda; Junji Sugiyama; Tomoyuki Morita; Shunsaku Kimura
Journal:  Org Biomol Chem       Date:  2006-04-13       Impact factor: 3.876

9.  Molecular assembly formation of cyclic hexa-beta-peptide composed of acetylated glycosamino acids.

Authors:  Tatsuya Hirata; Futoshi Fujimura; Yoshiki Horikawa; Junji Sugiyama; Tomoyuki Morita; Shunsaku Kimura
Journal:  Biopolymers       Date:  2007       Impact factor: 2.505

Review 10.  Protein-protein interaction through beta-strand addition.

Authors:  Han Remaut; Gabriel Waksman
Journal:  Trends Biochem Sci       Date:  2006-07-07       Impact factor: 13.807

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  11 in total

1.  Computational design of a symmetric homodimer using β-strand assembly.

Authors:  P Benjamin Stranges; Mischa Machius; Michael J Miley; Ashutosh Tripathy; Brian Kuhlman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-05       Impact factor: 11.205

2.  Small Molecule Probes That Perturb A Protein-protein Interface In Antithrombin.

Authors:  Dongyue Xin; Andreas Holzenburg; Kevin Burgess
Journal:  Chem Sci       Date:  2014-12-01       Impact factor: 9.825

Review 3.  The supramolecular chemistry of β-sheets.

Authors:  Pin-Nan Cheng; Johnny D Pham; James S Nowick
Journal:  J Am Chem Soc       Date:  2013-04-02       Impact factor: 15.419

4.  Synthesis and conformational analysis of bicyclic extended dipeptide surrogates.

Authors:  Sujeewa Ranatunga; Wathsala Liyanage; Juan R Del Valle
Journal:  J Org Chem       Date:  2010-08-06       Impact factor: 4.354

5.  Giant macrolactams based on β-sheet peptides.

Authors:  Pin-Nan Cheng; James S Nowick
Journal:  J Org Chem       Date:  2011-04-15       Impact factor: 4.354

6.  Characteristics of amyloid-related oligomers revealed by crystal structures of macrocyclic β-sheet mimics.

Authors:  Cong Liu; Michael R Sawaya; Pin-Nan Cheng; Jing Zheng; James S Nowick; David Eisenberg
Journal:  J Am Chem Soc       Date:  2011-04-07       Impact factor: 15.419

7.  Macrocyclic design strategies for small, stable parallel beta-sheet scaffolds.

Authors:  Felix Freire; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2009-06-17       Impact factor: 15.419

8.  Covalent Linkage and Macrocylization Preserve and Enhance Synergistic Interactions in Catalytic Amyloids.

Authors:  Zsofia Lengyel-Zhand; Liam R Marshall; Maximilian Jung; Megha Jayachandran; Min-Chul Kim; Austin Kriews; Olga V Makhlynets; H Christopher Fry; Armin Geyer; Ivan V Korendovych
Journal:  Chembiochem       Date:  2020-11-06       Impact factor: 3.164

9.  Identification of Secondary Binding Sites on Protein Surfaces for Rational Elaboration of Synthetic Protein Mimics.

Authors:  Justin M Torner; Yuwei Yang; David Rooklin; Yingkai Zhang; Paramjit S Arora
Journal:  ACS Chem Biol       Date:  2021-07-06       Impact factor: 4.634

10.  An Improved Turn Structure for Inducing β-Hairpin Formation in Peptides.

Authors:  Xingyue Li; Andrew L Sabol; Michał Wierzbicki; Patrick J Salveson; James S Nowick
Journal:  Angew Chem Int Ed Engl       Date:  2021-09-12       Impact factor: 16.823

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