Literature DB >> 17918935

An artificial beta-sheet that dimerizes through parallel beta-sheet interactions.

Sergiy Levin1, James S Nowick.   

Abstract

This Article introduces a simple chemical model of a beta-sheet (artificial beta-sheet) that dimerizes by parallel beta-sheet formation in chloroform solution. The artificial beta-sheet consists of two N-terminally linked peptide strands that are linked with succinic or fumaric acid and blocked along one edge with a hydrogen-bonding template composed of 5-aminoanisic acid hydrazide. The template is connected to one of the peptide strands by a turn unit composed of (S)-2-aminoadipic acid (Aaa). 1H NMR spectroscopic studies show that these artificial beta-sheets fold in CDCl3 solution to form well-defined beta-sheet structures that dimerize through parallel beta-sheet interactions. Most notably, all of these compounds show a rich network of NOEs associated with folding and dimerization. The compounds also exhibit chemical shifts and coupling constants consistent with the formation of folded dimeric beta-sheet structures. The aminoadipic acid unit shows patterns of NOEs and coupling constants consistent with a well-defined turn conformation. The present system represents a significant step toward modeling the type of parallel beta-sheet interactions that occur in protein aggregation.

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Year:  2007        PMID: 17918935      PMCID: PMC2593858          DOI: 10.1021/ja073391r

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  32 in total

1.  The nucleation of monomeric parallel beta-sheet-like structures and their self-assembly in aqueous solution.

Authors:  P Chitnumsub; W R Fiori; H A Lashuel; H Diaz; J W Kelly
Journal:  Bioorg Med Chem       Date:  1999-01       Impact factor: 3.641

2.  Sequence-selective molecular recognition between beta sheets.

Authors:  James S Nowick; De Michael Chung
Journal:  Angew Chem Int Ed Engl       Date:  2003-04-17       Impact factor: 15.336

3.  Structure of the cross-beta spine of amyloid-like fibrils.

Authors:  Rebecca Nelson; Michael R Sawaya; Melinda Balbirnie; Anders Ø Madsen; Christian Riekel; Robert Grothe; David Eisenberg
Journal:  Nature       Date:  2005-06-09       Impact factor: 49.962

4.  The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy.

Authors:  D S Wishart; B D Sykes; F M Richards
Journal:  Biochemistry       Date:  1992-02-18       Impact factor: 3.162

5.  Influence of N-methylation on a cation-pi interaction produces a remarkably stable beta-hairpin peptide.

Authors:  Robert M Hughes; Marcey L Waters
Journal:  J Am Chem Soc       Date:  2005-05-11       Impact factor: 15.419

6.  Two new beta-strand mimics.

Authors:  J H Tsai; A S Waldman; J S Nowick
Journal:  Bioorg Med Chem       Date:  1999-01       Impact factor: 3.641

7.  Correlation of structural elements and infectivity of the HET-s prion.

Authors:  Christiane Ritter; Marie-Lise Maddelein; Ansgar B Siemer; Thorsten Lührs; Matthias Ernst; Beat H Meier; Sven J Saupe; Roland Riek
Journal:  Nature       Date:  2005-06-09       Impact factor: 49.962

8.  A photoinducible beta-hairpin.

Authors:  Andreas Aemissegger; Vincent Kräutler; Wilfred F van Gunsteren; Donald Hilvert
Journal:  J Am Chem Soc       Date:  2005-03-09       Impact factor: 15.419

9.  Stabilization of beta-hairpin peptides by salt bridges: role of preorganization in the energetic contribution of weak interactions.

Authors:  Barbara Ciani; Muriel Jourdan; Mark S Searle
Journal:  J Am Chem Soc       Date:  2003-07-30       Impact factor: 15.419

10.  Relationship between nuclear magnetic resonance chemical shift and protein secondary structure.

Authors:  D S Wishart; B D Sykes; F M Richards
Journal:  J Mol Biol       Date:  1991-11-20       Impact factor: 5.469

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  10 in total

1.  Exploring beta-sheet structure and interactions with chemical model systems.

Authors:  James S Nowick
Journal:  Acc Chem Res       Date:  2008-09-18       Impact factor: 22.384

Review 2.  The supramolecular chemistry of β-sheets.

Authors:  Pin-Nan Cheng; Johnny D Pham; James S Nowick
Journal:  J Am Chem Soc       Date:  2013-04-02       Impact factor: 15.419

3.  Synthesis and conformational analysis of bicyclic extended dipeptide surrogates.

Authors:  Sujeewa Ranatunga; Wathsala Liyanage; Juan R Del Valle
Journal:  J Org Chem       Date:  2010-08-06       Impact factor: 4.354

4.  Somatostatin binds to the human amyloid β peptide and favors the formation of distinct oligomers.

Authors:  Hansen Wang; Lisa D Muiznieks; Punam Ghosh; Declan Williams; Michael Solarski; Andrew Fang; Alejandro Ruiz-Riquelme; Régis Pomès; Joel C Watts; Avi Chakrabartty; Holger Wille; Simon Sharpe; Gerold Schmitt-Ulms
Journal:  Elife       Date:  2017-06-26       Impact factor: 8.140

5.  Characteristics of amyloid-related oligomers revealed by crystal structures of macrocyclic β-sheet mimics.

Authors:  Cong Liu; Michael R Sawaya; Pin-Nan Cheng; Jing Zheng; James S Nowick; David Eisenberg
Journal:  J Am Chem Soc       Date:  2011-04-07       Impact factor: 15.419

6.  A new artificial beta-sheet that dimerizes through parallel beta-sheet interactions.

Authors:  Sergiy Levin; James S Nowick
Journal:  Org Lett       Date:  2009-02-19       Impact factor: 6.005

7.  Synthesis and binding studies of two new macrocyclic receptors for the stereoselective recognition of dipeptides.

Authors:  Ana Maria Castilla; M Morgan Conn; Pablo Ballester
Journal:  Beilstein J Org Chem       Date:  2010-01-19       Impact factor: 2.883

8.  Macrocyclic design strategies for small, stable parallel beta-sheet scaffolds.

Authors:  Felix Freire; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2009-06-17       Impact factor: 15.419

9.  Diacid linkers that promote parallel beta-sheet secondary structure in water.

Authors:  Felix Freire; John D Fisk; Aaron J Peoples; Monika Ivancic; Ilia A Guzei; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2008-05-29       Impact factor: 15.419

Review 10.  Artificial beta-sheets: chemical models of beta-sheets.

Authors:  Omid Khakshoor; James S Nowick
Journal:  Curr Opin Chem Biol       Date:  2008-09-05       Impact factor: 8.822

  10 in total

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