Literature DB >> 12450807

Purification and characterization of carbazole 1,9a-dioxygenase, a three-component dioxygenase system of Pseudomonas resinovorans strain CA10.

Jeong-Won Nam1, Hideaki Nojiri, Haruko Noguchi, Hiromasa Uchimura, Takako Yoshida, Hiroshi Habe, Hisakazu Yamane, Toshio Omori.   

Abstract

The carbazole 1,9a-dioxygenase (CARDO) system of Pseudomonas resinovorans strain CA10 consists of terminal oxygenase (CarAa), ferredoxin (CarAc), and ferredoxin reductase (CarAd). Each component of CARDO was expressed in Escherichia coli strain BL21(DE3) as a native form (CarAa) or a His-tagged form (CarAc and CarAd) and was purified to apparent homogeneity. CarAa was found to be trimeric and to have one Rieske type [2Fe-2S] cluster and one mononuclear iron center in each monomer. Both His-tagged proteins were found to be monomeric and to contain the prosthetic groups predicted from the deduced amino acid sequence (His-tagged CarAd, one FAD and one [2Fe-2S] cluster per monomer protein; His-tagged CarAc, one Rieske type [2Fe-2S] cluster per monomer protein). Both NADH and NADPH were effective as electron donors for His-tagged CarAd. However, since the k(cat)/K(m) for NADH is 22.3-fold higher than that for NADPH in the 2,6-dichlorophenolindophenol reductase assay, NADH was supposed to be the physiological electron donor of CarAd. In the presence of NADH, His-tagged CarAc was reduced by His-tagged CarAd. Similarly, CarAa was reduced by His-tagged CarAc, His-tagged CarAd, and NADH. The three purified proteins could reconstitute the CARDO activity in vitro. In the reconstituted CARDO system, His-tagged CarAc seemed to be indispensable for electron transport, while His-tagged CarAd could be replaced by some unrelated reductases.

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Year:  2002        PMID: 12450807      PMCID: PMC134387          DOI: 10.1128/AEM.68.12.5882-5890.2002

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  45 in total

1.  New classification system for oxygenase components involved in ring-hydroxylating oxygenations.

Authors:  J W Nam; H Nojiri; T Yoshida; H Habe; H Yamane; T Omori
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2.  Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase.

Authors:  T Senda; T Yamada; N Sakurai; M Kubota; T Nishizaki; E Masai; M Fukuda; Y Mitsuidagger
Journal:  J Mol Biol       Date:  2000-12-01       Impact factor: 5.469

3.  Crystallization and preliminary crystallographic analysis of the terminal oxygenase component of carbazole 1,9a-dioxygenase of Pseudomonas resinovorans strain CA10.

Authors:  Jeong Won Nam; Zui Fujimoto; Hiroshi Mizuno; Hisakazu Yamane; Takako Yoshida; Hiroshi Habe; Hideaki Nojiri; Toshio Omori
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-07-20

4.  Degradation of chlorinated dibenzofurans and dibenzo-p-dioxins by two types of bacteria having angular dioxygenases with different features.

Authors:  H Habe; J S Chung; J H Lee; K Kasuga; T Yoshida; H Nojiri; T Omori
Journal:  Appl Environ Microbiol       Date:  2001-08       Impact factor: 4.792

5.  Kinetic and Mössbauer studies on the mechanism of protocatechuic acid 4,5-oxygenase.

Authors:  R Zabinski; E Münck; P M Champion; J M Wood
Journal:  Biochemistry       Date:  1972-08-15       Impact factor: 3.162

6.  Statistical analysis of enzyme kinetic data.

Authors:  W W Cleland
Journal:  Methods Enzymol       Date:  1979       Impact factor: 1.600

7.  Genetic characterization and evolutionary implications of a car gene cluster in the carbazole degrader Pseudomonas sp. strain CA10.

Authors:  H Nojiri; H Sekiguchi; K Maeda; M Urata; S Nakai; T Yoshida; H Habe; T Omori
Journal:  J Bacteriol       Date:  2001-06       Impact factor: 3.490

8.  Purification and properties of ferredoxinTOL. A component of toluene dioxygenase from Pseudomonas putida F1.

Authors:  V Subramanian; T N Liu; W K Yeh; C M Serdar; L P Wackett; D T Gibson
Journal:  J Biol Chem       Date:  1985-02-25       Impact factor: 5.157

9.  Isopropylbenzene catabolic pathway in Pseudomonas putida RE204: nucleotide sequence analysis of the ipb operon and neighboring DNA from pRE4.

Authors:  R W Eaton; O V Selifonova; R M Gedney
Journal:  Biodegradation       Date:  1998       Impact factor: 3.909

10.  Phthalate dioxygenase reductase: a modular structure for electron transfer from pyridine nucleotides to [2Fe-2S].

Authors:  C C Correll; C J Batie; D P Ballou; M L Ludwig
Journal:  Science       Date:  1992-12-04       Impact factor: 47.728

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  24 in total

1.  Crystallization and preliminary X-ray diffraction studies of the terminal oxygenase component of carbazole 1,9a-dioxygenase from Nocardioides aromaticivorans IC177.

Authors:  Kengo Inoue; Yuji Ashikawa; Yusuke Usami; Haruko Noguchi; Zui Fujimoto; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-11-04

2.  Substrate-baited nanoparticles: a catch and release strategy for enzyme recognition and harvesting.

Authors:  Michael A Daniele; Yuriy P Bandera; Deepti Sharma; Parul Rungta; Ryan Roeder; Michael G Sehorn; Stephen H Foulger
Journal:  Small       Date:  2012-04-24       Impact factor: 13.281

3.  Crystallization and preliminary X-ray diffraction studies of the ferredoxin reductase component in the Rieske nonhaem iron oxygenase system carbazole 1,9a-dioxygenase.

Authors:  Yuji Ashikawa; Hiromasa Uchimura; Zui Fujimoto; Kengo Inoue; Haruko Noguchi; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-05-12

4.  Crystallization and preliminary crystallographic analysis of the ferredoxin component of carbazole 1,9a-dioxygenase from Nocardioides aromaticivorans IC177.

Authors:  Kengo Inoue; Yuji Ashikawa; Yusuke Usami; Haruko Noguchi; Zui Fujimoto; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-09-19

5.  Crystallization and preliminary X-ray diffraction analysis of the electron-transfer complex between the terminal oxygenase component and ferredoxin in the Rieske non-haem iron oxygenase system carbazole 1,9a-dioxygenase.

Authors:  Yuji Ashikawa; Zui Fujimoto; Haruko Noguchi; Hiroshi Habe; Toshio Omori; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-06-01

6.  Similar enzymes, different structures: phthalate dioxygenase is an alpha3alpha3 stacked hexamer, not an alpha3beta3 trimer like "normal" Rieske oxygenases.

Authors:  Michael Tarasev; Catherine S Kaddis; Sheng Yin; Joseph A Loo; John Burgner; David P Ballou
Journal:  Arch Biochem Biophys       Date:  2007-07-14       Impact factor: 4.013

7.  Crystallization and preliminary X-ray diffraction studies of the reduced form of the terminal oxygenase component of the Rieske nonhaem iron oxygenase system carbazole 1,9a-dioxygenase.

Authors:  Jun Matsuzawa; Takashi Umeda; Hiroki Aikawa; Chiho Suzuki; Zui Fujimoto; Kazunori Okada; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-10-30

8.  Isolation and description of a stable carbazole-degrading microbial consortium consisting of Chryseobacterium sp. NCY and Achromobacter sp. NCW.

Authors:  Weiqiang Guo; Daping Li; Yong Tao; Ping Gao; Jijun Hu
Journal:  Curr Microbiol       Date:  2008-06-27       Impact factor: 2.188

Review 9.  Properties, environmental fate and biodegradation of carbazole.

Authors:  Lateef B Salam; Mathew O Ilori; Olukayode O Amund
Journal:  3 Biotech       Date:  2017-05-31       Impact factor: 2.406

10.  Structural basis of the divergent oxygenation reactions catalyzed by the rieske nonheme iron oxygenase carbazole 1,9a-dioxygenase.

Authors:  Kengo Inoue; Yusuke Usami; Yuji Ashikawa; Haruko Noguchi; Takashi Umeda; Aiko Yamagami-Ashikawa; Tadafumi Horisaki; Hiromasa Uchimura; Tohru Terada; Shugo Nakamura; Kentaro Shimizu; Hiroshi Habe; Hisakazu Yamane; Zui Fujimoto; Hideaki Nojiri
Journal:  Appl Environ Microbiol       Date:  2014-02-28       Impact factor: 4.792

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