Literature DB >> 17554172

Crystallization and preliminary X-ray diffraction studies of the ferredoxin reductase component in the Rieske nonhaem iron oxygenase system carbazole 1,9a-dioxygenase.

Yuji Ashikawa1, Hiromasa Uchimura, Zui Fujimoto, Kengo Inoue, Haruko Noguchi, Hisakazu Yamane, Hideaki Nojiri.   

Abstract

Carbazole 1,9a-dioxygenase (CARDO), which consists of an oxygenase component (CARDO-O) and the electron-transport components ferredoxin (CARDO-F) and ferredoxin reductase (CARDO-R), catalyzes dihydroxylation at the C1 and C9a positions of carbazole. CARDO-R was crystallized at 277 K using the hanging-drop vapour-diffusion method with the precipitant PEG 8000. Two crystal types (types I and II) were obtained. The type I crystal diffracted to a maximum resolution of 2.80 A and belonged to space group P4(2)2(1)2, with unit-cell parameters a = b = 158.7, c = 81.4 A. The type II crystal was obtained in drops from which type I crystals had been removed; it diffracted to 2.60 A resolution and belonged to the same space group, with unit-cell parameters a = b = 161.8, c = 79.5 A.

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Year:  2007        PMID: 17554172      PMCID: PMC2335075          DOI: 10.1107/S174430910702163X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  28 in total

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Authors:  Jeong-Won Nam; Hideaki Nojiri; Haruko Noguchi; Hiromasa Uchimura; Takako Yoshida; Hiroshi Habe; Hisakazu Yamane; Toshio Omori
Journal:  Appl Environ Microbiol       Date:  2002-12       Impact factor: 4.792

2.  Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase.

Authors:  T Senda; T Yamada; N Sakurai; M Kubota; T Nishizaki; E Masai; M Fukuda; Y Mitsuidagger
Journal:  J Mol Biol       Date:  2000-12-01       Impact factor: 5.469

Review 3.  The electron-transport proteins of hydroxylating bacterial dioxygenases.

Authors:  J R Mason; R Cammack
Journal:  Annu Rev Microbiol       Date:  1992       Impact factor: 15.500

Review 4.  Biphenyl dioxygenases: functional versatilities and directed evolution.

Authors:  Kensuke Furukawa; Hikaru Suenaga; Masatoshi Goto
Journal:  J Bacteriol       Date:  2004-08       Impact factor: 3.490

Review 5.  Bacterial metabolism of fluorene, dibenzofuran, dibenzothiophene, and carbazole.

Authors:  D C Bressler; P M Fedorak
Journal:  Can J Microbiol       Date:  2000-05       Impact factor: 2.419

Review 6.  Molecular bases of aerobic bacterial degradation of dioxins: involvement of angular dioxygenation.

Authors:  Hideaki Nojiri; Toshio Omori
Journal:  Biosci Biotechnol Biochem       Date:  2002-10       Impact factor: 2.043

Review 7.  Genetics of polycyclic aromatic hydrocarbon metabolism in diverse aerobic bacteria.

Authors:  Hiroshi Habe; Toshio Omori
Journal:  Biosci Biotechnol Biochem       Date:  2003-02       Impact factor: 2.043

8.  Divergent structures of carbazole degradative car operons isolated from gram-negative bacteria.

Authors:  Kengo Inoue; Jaka Widada; Seiichiro Nakai; Takayuki Endoh; Masaaki Urata; Yuji Ashikawa; Masaki Shintani; Yuko Saiki; Takako Yoshida; Hiroshi Habe; Toshio Omori; Hideaki Nojiri
Journal:  Biosci Biotechnol Biochem       Date:  2004-07       Impact factor: 2.043

9.  X-ray crystal structure of benzoate 1,2-dioxygenase reductase from Acinetobacter sp. strain ADP1.

Authors:  Andreas Karlsson; Zanna M Beharry; D Matthew Eby; Eric D Coulter; Ellen L Neidle; Donald M Kurtz; Hans Eklund; S Ramaswamy
Journal:  J Mol Biol       Date:  2002-04-26       Impact factor: 5.469

10.  Phthalate dioxygenase reductase: a modular structure for electron transfer from pyridine nucleotides to [2Fe-2S].

Authors:  C C Correll; C J Batie; D P Ballou; M L Ludwig
Journal:  Science       Date:  1992-12-04       Impact factor: 47.728

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  5 in total

1.  Crystallization and preliminary X-ray diffraction studies of a terminal oxygenase of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1.

Authors:  Takashi Umeda; Junichi Katsuki; Yuji Ashikawa; Yusuke Usami; Kengo Inoue; Haruko Noguchi; Zui Fujimoto; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-10-28

2.  Crystallization and preliminary X-ray diffraction studies of a ferredoxin reductase component of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1.

Authors:  Takashi Umeda; Junichi Katsuki; Yuji Ashikawa; Yusuke Usami; Kengo Inoue; Haruko Noguchi; Zui Fujimoto; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-05-29

3.  Structural basis of the divergent oxygenation reactions catalyzed by the rieske nonheme iron oxygenase carbazole 1,9a-dioxygenase.

Authors:  Kengo Inoue; Yusuke Usami; Yuji Ashikawa; Haruko Noguchi; Takashi Umeda; Aiko Yamagami-Ashikawa; Tadafumi Horisaki; Hiromasa Uchimura; Tohru Terada; Shugo Nakamura; Kentaro Shimizu; Hiroshi Habe; Hisakazu Yamane; Zui Fujimoto; Hideaki Nojiri
Journal:  Appl Environ Microbiol       Date:  2014-02-28       Impact factor: 4.792

4.  Design principles for site-selective hydroxylation by a Rieske oxygenase.

Authors:  Jianxin Liu; Jiayi Tian; Christopher Perry; April L Lukowski; Tzanko I Doukov; Alison R H Narayan; Jennifer Bridwell-Rabb
Journal:  Nat Commun       Date:  2022-01-11       Impact factor: 14.919

5.  Crystal structure of the ferredoxin reductase component of carbazole 1,9a-dioxygenase from Janthinobacterium sp. J3.

Authors:  Yuji Ashikawa; Zui Fujimoto; Kengo Inoue; Hisakazu Yamane; Hideaki Nojiri
Journal:  Acta Crystallogr D Struct Biol       Date:  2021-06-18       Impact factor: 7.652

  5 in total

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