Literature DB >> 16443647

ATP hydrolysis stimulates large length fluctuations in single actin filaments.

Evgeny B Stukalin1, Anatoly B Kolomeisky.   

Abstract

Polymerization dynamics of single actin filaments is investigated theoretically using a stochastic model that takes into account the hydrolysis of ATP-actin subunits, the geometry of actin filament tips, and the lateral interactions between the monomers as well as the processes at both ends of the polymer. Exact analytical expressions are obtained for the mean growth velocity, for the dispersion in the length fluctuations, and the nucleotide composition of the actin filaments. It is found that the ATP hydrolysis has a strong effect on dynamic properties of single actin filaments. At high concentrations of free actin monomers, the mean size of the unhydrolyzed ATP-cap is very large, and the dynamics is governed by association/dissociation of ATP-actin subunits. However, at low concentrations the size of the cap becomes finite, and the dissociation of ADP-actin subunits makes a significant contribution to overall dynamics. Actin filament length fluctuations reach a sharp maximum at the boundary between two dynamic regimes, and this boundary is always larger than the critical concentration for the actin filament's growth at the barbed end, assuming the sequential release of phosphate. Random and sequential mechanisms of hydrolysis are compared, and it is found that they predict qualitatively similar dynamic properties at low and high concentrations of free actin monomers with some deviations near the critical concentration. The possibility of attachment and detachment of oligomers in actin filament's growth is also discussed. Our theoretical approach is successfully applied to analyze the latest experiments on the growth and length fluctuations of individual actin filaments.

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Year:  2006        PMID: 16443647      PMCID: PMC1414574          DOI: 10.1529/biophysj.105.074211

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  37 in total

1.  Microtubule treadmilling in vitro investigated by fluorescence speckle and confocal microscopy.

Authors:  S Grego; V Cantillana; E D Salmon
Journal:  Biophys J       Date:  2001-07       Impact factor: 4.033

2.  Microscopic analysis of polymerization dynamics with individual actin filaments.

Authors:  Ikuko Fujiwara; Shin Takahashi; Hisashi Tadakuma; Takashi Funatsu; Shin'ichi Ishiwata
Journal:  Nat Cell Biol       Date:  2002-09       Impact factor: 28.824

3.  Scaling of microtubule force-velocity curves obtained at different tubulin concentrations.

Authors:  Marcel E Janson; Marileen Dogterom
Journal:  Phys Rev Lett       Date:  2004-06-16       Impact factor: 9.161

4.  Nonlinear increase of elongation rate of actin filaments with actin monomer concentration.

Authors:  T Keiser; A Schiller; A Wegner
Journal:  Biochemistry       Date:  1986-08-26       Impact factor: 3.162

5.  Direct evidence for ADP-Pi-F-actin as the major intermediate in ATP-actin polymerization. Rate of dissociation of Pi from actin filaments.

Authors:  M F Carlier; D Pantaloni
Journal:  Biochemistry       Date:  1986-12-02       Impact factor: 3.162

6.  Theoretical study of a model for the ATP cap at the end of an actin filament.

Authors:  T L Hill
Journal:  Biophys J       Date:  1986-05       Impact factor: 4.033

7.  Dynamics of microtubules visualized by darkfield microscopy: treadmilling and dynamic instability.

Authors:  H Hotani; T Horio
Journal:  Cell Motil Cytoskeleton       Date:  1988

8.  Actin filament barbed end elongation with nonmuscle MgATP-actin and MgADP-actin in the presence of profilin.

Authors:  Henry J Kinosian; Lynn A Selden; Lewis C Gershman; James E Estes
Journal:  Biochemistry       Date:  2002-05-28       Impact factor: 3.162

9.  Actin polymerization and ATP hydrolysis.

Authors:  E D Korn; M F Carlier; D Pantaloni
Journal:  Science       Date:  1987-10-30       Impact factor: 47.728

10.  A model for actin polymerization and the kinetic effects of ATP hydrolysis.

Authors:  D Pantaloni; T L Hill; M F Carlier; E D Korn
Journal:  Proc Natl Acad Sci U S A       Date:  1985-11       Impact factor: 11.205

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  26 in total

1.  Random hydrolysis controls the dynamic instability of microtubules.

Authors:  Ranjith Padinhateeri; Anatoly B Kolomeisky; David Lacoste
Journal:  Biophys J       Date:  2012-03-20       Impact factor: 4.033

2.  Role of ATP-hydrolysis in the dynamics of a single actin filament.

Authors:  Padinhateeri Ranjith; Kirone Mallick; Jean-François Joanny; David Lacoste
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

3.  Design of active transport must be highly intricate: a possible role of myosin and Ena/VASP for G-actin transport in filopodia.

Authors:  Pavel I Zhuravlev; Bryan S Der; Garegin A Papoian
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

4.  Direct measurement of force generation by actin filament polymerization using an optical trap.

Authors:  Matthew J Footer; Jacob W J Kerssemakers; Julie A Theriot; Marileen Dogterom
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-02       Impact factor: 11.205

5.  Polymerization kinetics of ADP- and ADP-Pi-actin determined by fluorescence microscopy.

Authors:  Ikuko Fujiwara; Dimitrios Vavylonis; Thomas D Pollard
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-15       Impact factor: 11.205

6.  Stochastic simulation of actin dynamics reveals the role of annealing and fragmentation.

Authors:  Joseph Fass; Chi Pak; James Bamburg; Alex Mogilner
Journal:  J Theor Biol       Date:  2008-01-11       Impact factor: 2.691

7.  The stochastic dynamics of filopodial growth.

Authors:  Yueheng Lan; Garegin A Papoian
Journal:  Biophys J       Date:  2008-01-30       Impact factor: 4.033

8.  Nonequilibrium self-assembly of a filament coupled to ATP/GTP hydrolysis.

Authors:  Padinhateeri Ranjith; David Lacoste; Kirone Mallick; Jean-François Joanny
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

9.  Effect of profilin on actin critical concentration: a theoretical analysis.

Authors:  Elena G Yarmola; Dmitri A Dranishnikov; Michael R Bubb
Journal:  Biophys J       Date:  2008-10-03       Impact factor: 4.033

Review 10.  Regulation of Microtubule Growth and Catastrophe: Unifying Theory and Experiment.

Authors:  Hugo Bowne-Anderson; Anneke Hibbel; Jonathon Howard
Journal:  Trends Cell Biol       Date:  2015-12       Impact factor: 20.808

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