Literature DB >> 20409460

Role of ATP-hydrolysis in the dynamics of a single actin filament.

Padinhateeri Ranjith1, Kirone Mallick, Jean-François Joanny, David Lacoste.   

Abstract

We study the stochastic dynamics of growth and shrinkage of single actin filaments taking into account insertion, removal, and ATP hydrolysis of subunits either according to the vectorial mechanism or to the random mechanism. In a previous work, we developed a model for a single actin or microtubule filament where hydrolysis occurred according to the vectorial mechanism: the filament could grow only from one end, and was in contact with a reservoir of monomers. Here we extend this approach in two ways--by including the dynamics of both ends and by comparing two possible mechanisms of ATP hydrolysis. Our emphasis is mainly on two possible limiting models for the mechanism of hydrolysis within a single filament, namely the vectorial or the random model. We propose a set of experiments to test the nature of the precise mechanism of hydrolysis within actin filaments. Copyright 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20409460      PMCID: PMC2856186          DOI: 10.1016/j.bpj.2009.12.4306

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  27 in total

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3.  Stochastic simulation of actin dynamics reveals the role of annealing and fragmentation.

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4.  Model of reduction of actin polymerization forces by ATP hydrolysis.

Authors:  A E Carlsson
Journal:  Phys Biol       Date:  2008-07-14       Impact factor: 2.583

5.  Nonequilibrium self-assembly of a filament coupled to ATP/GTP hydrolysis.

Authors:  Padinhateeri Ranjith; David Lacoste; Kirone Mallick; Jean-François Joanny
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

6.  Nonlinear increase of elongation rate of actin filaments with actin monomer concentration.

Authors:  T Keiser; A Schiller; A Wegner
Journal:  Biochemistry       Date:  1986-08-26       Impact factor: 3.162

7.  Direct evidence for ADP-Pi-F-actin as the major intermediate in ATP-actin polymerization. Rate of dissociation of Pi from actin filaments.

Authors:  M F Carlier; D Pantaloni
Journal:  Biochemistry       Date:  1986-12-02       Impact factor: 3.162

8.  A model for actin polymerization and the kinetic effects of ATP hydrolysis.

Authors:  D Pantaloni; T L Hill; M F Carlier; E D Korn
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9.  Dynamics of Microtubule Instabilities.

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10.  Rate constants for the reactions of ATP- and ADP-actin with the ends of actin filaments.

Authors:  T D Pollard
Journal:  J Cell Biol       Date:  1986-12       Impact factor: 10.539

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  14 in total

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Authors:  Ranjith Padinhateeri; Anatoly B Kolomeisky; David Lacoste
Journal:  Biophys J       Date:  2012-03-20       Impact factor: 4.033

2.  Insights into the Cooperative Nature of ATP Hydrolysis in Actin Filaments.

Authors:  Harshwardhan H Katkar; Aram Davtyan; Aleksander E P Durumeric; Glen M Hocky; Anthony C Schramm; Enrique M De La Cruz; Gregory A Voth
Journal:  Biophys J       Date:  2018-09-01       Impact factor: 4.033

3.  A theoretical analysis of filament length fluctuations in actin and other polymers.

Authors:  Jifeng Hu; Hans G Othmer
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Review 4.  Regulation of Microtubule Growth and Catastrophe: Unifying Theory and Experiment.

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Journal:  Trends Cell Biol       Date:  2015-12       Impact factor: 20.808

5.  Quantitative analysis of approaches to measure cooperative phosphate release in polymerized actin.

Authors:  Mark M Burnett; Anders E Carlsson
Journal:  Biophys J       Date:  2012-12-05       Impact factor: 4.033

6.  Genome-wide CRISPR/Cas9 deletion screen defines mitochondrial gene essentiality and identifies routes for tumour cell viability in hypoxia.

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Journal:  Commun Biol       Date:  2021-05-21

7.  Effects of random hydrolysis on biofilament length distributions in a shared subunit pool.

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Journal:  Biophys J       Date:  2021-12-23       Impact factor: 4.033

8.  Directional Migration of Breast Cancer Cells Hindered by Induced Electric Fields May Be Due to Accompanying Alteration of Metabolic Activity.

Authors:  Travis H Jones; Kirti Kaul; Ayush A Garg; Jonathan W Song; Ramesh K Ganju; Vish V Subramaniam
Journal:  Bioelectricity       Date:  2021-03-16

9.  Microfluidics pushes forward microscopy analysis of actin dynamics.

Authors:  Antoine Jégou; Marie-France Carlier; Guillaume Romet-Lemonne
Journal:  Bioarchitecture       Date:  2011-11-01

10.  Microtubule dynamic instability: a new model with coupled GTP hydrolysis and multistep catastrophe.

Authors:  Hugo Bowne-Anderson; Marija Zanic; Monika Kauer; Jonathon Howard
Journal:  Bioessays       Date:  2013-03-27       Impact factor: 4.345

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