Literature DB >> 18835900

Effect of profilin on actin critical concentration: a theoretical analysis.

Elena G Yarmola1, Dmitri A Dranishnikov, Michael R Bubb.   

Abstract

To explain the effect of profilin on actin critical concentration in a manner consistent with thermodynamic constraints and available experimental data, we built a thermodynamically rigorous model of actin steady-state dynamics in the presence of profilin. We analyzed previously published mechanisms theoretically and experimentally and, based on our analysis, suggest a new explanation for the effect of profilin. It is based on a general principle of indirect energy coupling. The fluctuation-based process of exchange diffusion indirectly couples the energy of ATP hydrolysis to actin polymerization. Profilin modulates this coupling, producing two basic effects. The first is based on the acceleration of exchange diffusion by profilin, which indicates, paradoxically, that a faster rate of actin depolymerization promotes net polymerization. The second is an affinity-based mechanism similar to the one suggested in 1993 by Pantaloni and Carlier although based on indirect rather than direct energy coupling. In the model by Pantaloni and Carlier, transformation of chemical energy of ATP hydrolysis into polymerization energy is regulated by direct association of each step in the hydrolysis reaction with a corresponding step in polymerization. Thus, hydrolysis becomes a time-limiting step in actin polymerization. In contrast, indirect coupling allows ATP hydrolysis to lag behind actin polymerization, consistent with experimental results.

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Year:  2008        PMID: 18835900      PMCID: PMC2599847          DOI: 10.1529/biophysj.108.134569

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  62 in total

1.  Cooperative symmetry-breaking by actin polymerization in a model for cell motility.

Authors:  A van Oudenaarden; J A Theriot
Journal:  Nat Cell Biol       Date:  1999-12       Impact factor: 28.824

2.  Annealing accounts for the length of actin filaments formed by spontaneous polymerization.

Authors:  D Sept; J Xu; T D Pollard; J A McCammon
Journal:  Biophys J       Date:  1999-12       Impact factor: 4.033

3.  Tropomodulin increases the critical concentration of barbed end-capped actin filaments by converting ADP.P(i)-actin to ADP-actin at all pointed filament ends.

Authors:  A Weber; C R Pennise; V M Fowler
Journal:  J Biol Chem       Date:  1999-12-03       Impact factor: 5.157

4.  Actin-latrunculin A structure and function. Differential modulation of actin-binding protein function by latrunculin A.

Authors:  E G Yarmola; T Somasundaram; T A Boring; I Spector; M R Bubb
Journal:  J Biol Chem       Date:  2000-09-08       Impact factor: 5.157

Review 5.  The role of thermal activation in motion and force generation by molecular motors.

Authors:  R D Astumian
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2000-04-29       Impact factor: 6.237

6.  Hydrolysis of ATP by polymerized actin depends on the bound divalent cation but not profilin.

Authors:  Laurent Blanchoin; Thomas D Pollard
Journal:  Biochemistry       Date:  2002-01-15       Impact factor: 3.162

7.  Direct observation of base-pair stepping by RNA polymerase.

Authors:  Elio A Abbondanzieri; William J Greenleaf; Joshua W Shaevitz; Robert Landick; Steven M Block
Journal:  Nature       Date:  2005-11-13       Impact factor: 49.962

8.  Interdependence of profilin, cation, and nucleotide binding to vertebrate non-muscle actin.

Authors:  H J Kinosian; L A Selden; L C Gershman; J E Estes
Journal:  Biochemistry       Date:  2000-10-31       Impact factor: 3.162

9.  Formation and implications of a ternary complex of profilin, thymosin beta 4, and actin.

Authors:  E G Yarmola; S Parikh; M R Bubb
Journal:  J Biol Chem       Date:  2001-09-28       Impact factor: 5.157

10.  Profilin promotes barbed-end actin filament assembly without lowering the critical concentration.

Authors:  F Kang; D L Purich; F S Southwick
Journal:  J Biol Chem       Date:  1999-12-24       Impact factor: 5.157

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  8 in total

1.  Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium).

Authors:  Ying Bao; Guanjing Hu; Lex E Flagel; Armel Salmon; Magdalena Bezanilla; Andrew H Paterson; Zining Wang; Jonathan F Wendel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-12       Impact factor: 11.205

2.  A molecular and proteomic investigation of proteins rapidly released from triticale pollen upon hydration.

Authors:  Mohsin A Zaidi; Stephen O'Leary; Shaobo Wu; Steve Gleddie; François Eudes; André Laroche; Laurian S Robert
Journal:  Plant Mol Biol       Date:  2012-02-26       Impact factor: 4.076

Review 3.  Molecular insights on context-specific role of profilin-1 in cell migration.

Authors:  Zhijie Ding; Yong Ho Bae; Partha Roy
Journal:  Cell Adh Migr       Date:  2012-09-01       Impact factor: 3.405

4.  ACTIN-DIRECTED TOXIN. ACD toxin-produced actin oligomers poison formin-controlled actin polymerization.

Authors:  David B Heisler; Elena Kudryashova; Dmitry O Grinevich; Cristian Suarez; Jonathan D Winkelman; Konstantin G Birukov; Sainath R Kotha; Narasimham L Parinandi; Dimitrios Vavylonis; David R Kovar; Dmitri S Kudryashov
Journal:  Science       Date:  2015-07-31       Impact factor: 47.728

5.  Actin Turnover in Lamellipodial Fragments.

Authors:  Dikla Raz-Ben Aroush; Noa Ofer; Enas Abu-Shah; Jun Allard; Oleg Krichevsky; Alex Mogilner; Kinneret Keren
Journal:  Curr Biol       Date:  2017-09-28       Impact factor: 10.834

6.  Transcriptional loss of domestication-driven cytoskeletal GhPRF1 gene causes defective floral and fiber development in cotton (Gossypium).

Authors:  Dhananjay K Pandey; Bhupendra Chaudhary
Journal:  Plant Mol Biol       Date:  2021-10-04       Impact factor: 4.076

7.  Individual actin filaments in a microfluidic flow reveal the mechanism of ATP hydrolysis and give insight into the properties of profilin.

Authors:  Antoine Jégou; Thomas Niedermayer; József Orbán; Dominique Didry; Reinhard Lipowsky; Marie-France Carlier; Guillaume Romet-Lemonne
Journal:  PLoS Biol       Date:  2011-09-27       Impact factor: 8.029

8.  Silencing of Profilin-1 suppresses cell adhesion and tumor growth via predicted alterations in integrin and Ca2+ signaling in T24M-based bladder cancer models.

Authors:  Maria Frantzi; Zoi Klimou; Manousos Makridakis; Jerome Zoidakis; Agnieszka Latosinska; Daniel M Borràs; Bart Janssen; Ioanna Giannopoulou; Vasiliki Lygirou; Andreas C Lazaris; Nicholas P Anagnou; Harald Mischak; Maria G Roubelakis; Antonia Vlahou
Journal:  Oncotarget       Date:  2016-10-25
  8 in total

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