Literature DB >> 22455910

Random hydrolysis controls the dynamic instability of microtubules.

Ranjith Padinhateeri1, Anatoly B Kolomeisky, David Lacoste.   

Abstract

Uncovering mechanisms that control the dynamics of microtubules is fundamental for our understanding of multiple cellular processes such as chromosome separation and cell motility. Building on previous theoretical work on the dynamic instability of microtubules, we propose here a stochastic model that includes all relevant biochemical processes that affect the dynamics of microtubule plus-end, namely, the binding of GTP-bound monomers, unbinding of GTP- and GDP-bound monomers, and hydrolysis of GTP monomers. The inclusion of dissociation processes, present in our approach but absent from many previous studies, is essential to guarantee the thermodynamic consistency of the model. Our theoretical method allows us to compute all dynamic properties of microtubules explicitly. Using experimentally determined rates, it is found that the cap size is ∼3.6 layers, an estimate that is compatible with several experimental observations. In the end, our model provides a comprehensive description of the dynamic instability of microtubules that includes not only the statistics of catastrophes but also the statistics of rescues.
Copyright © 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22455910      PMCID: PMC3309290          DOI: 10.1016/j.bpj.2011.12.059

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  41 in total

1.  Dilution-induced disassembly of microtubules: relation to dynamic instability and the GTP cap.

Authors:  W A Voter; E T O'Brien; H P Erickson
Journal:  Cell Motil Cytoskeleton       Date:  1991

2.  A theory of microtubule catastrophes and their regulation.

Authors:  Ludovic Brun; Beat Rupp; Jonathan J Ward; François Nédélec
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-30       Impact factor: 11.205

3.  Tubulin bistability and polymorphic dynamics of microtubules.

Authors:  Hervé Mohrbach; Albert Johner; Igor M Kulić
Journal:  Phys Rev Lett       Date:  2010-12-28       Impact factor: 9.161

4.  Nonlinear increase of elongation rate of actin filaments with actin monomer concentration.

Authors:  T Keiser; A Schiller; A Wegner
Journal:  Biochemistry       Date:  1986-08-26       Impact factor: 3.162

5.  GDP-tubulin incorporation into growing microtubules modulates polymer stability.

Authors:  Odile Valiron; Isabelle Arnal; Nicolas Caudron; Didier Job
Journal:  J Biol Chem       Date:  2010-04-06       Impact factor: 5.157

6.  A thermodynamic model of microtubule assembly and disassembly.

Authors:  Bernard M A G Piette; Junli Liu; Kasper Peeters; Andrei Smertenko; Timothy Hawkins; Michael Deeks; Roy Quinlan; Wojciech J Zakrzewski; Patrick J Hussey
Journal:  PLoS One       Date:  2009-08-11       Impact factor: 3.240

Review 7.  Structural plasticity in actin and tubulin polymer dynamics.

Authors:  Hao Yuan Kueh; Timothy J Mitchison
Journal:  Science       Date:  2009-08-21       Impact factor: 47.728

8.  Dynamic instability of individual microtubules analyzed by video light microscopy: rate constants and transition frequencies.

Authors:  R A Walker; E T O'Brien; N K Pryer; M F Soboeiro; W A Voter; H P Erickson; E D Salmon
Journal:  J Cell Biol       Date:  1988-10       Impact factor: 10.539

9.  Dilution of individual microtubules observed in real time in vitro: evidence that cap size is small and independent of elongation rate.

Authors:  R A Walker; N K Pryer; E D Salmon
Journal:  J Cell Biol       Date:  1991-07       Impact factor: 10.539

10.  Control of microtubule dynamics and length by cyclin A- and cyclin B-dependent kinases in Xenopus egg extracts.

Authors:  F Verde; M Dogterom; E Stelzer; E Karsenti; S Leibler
Journal:  J Cell Biol       Date:  1992-09       Impact factor: 10.539

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  11 in total

1.  Molecular and Mechanical Causes of Microtubule Catastrophe and Aging.

Authors:  Pavel Zakharov; Nikita Gudimchuk; Vladimir Voevodin; Alexander Tikhonravov; Fazoil I Ataullakhanov; Ekaterina L Grishchuk
Journal:  Biophys J       Date:  2015-12-15       Impact factor: 4.033

2.  Behaviors of individual microtubules and microtubule populations relative to critical concentrations: dynamic instability occurs when critical concentrations are driven apart by nucleotide hydrolysis.

Authors:  Erin M Jonasson; Ava J Mauro; Chunlei Li; Ellen C Labuz; Shant M Mahserejian; Jared P Scripture; Ivan V Gregoretti; Mark Alber; Holly V Goodson
Journal:  Mol Biol Cell       Date:  2019-10-02       Impact factor: 4.138

Review 3.  Regulation of Microtubule Growth and Catastrophe: Unifying Theory and Experiment.

Authors:  Hugo Bowne-Anderson; Anneke Hibbel; Jonathon Howard
Journal:  Trends Cell Biol       Date:  2015-12       Impact factor: 20.808

4.  Structural model for differential cap maturation at growing microtubule ends.

Authors:  Juan Estévez-Gallego; Fernando Josa-Prado; Siou Ku; Ruben M Buey; Francisco A Balaguer; Andrea E Prota; Daniel Lucena-Agell; Christina Kamma-Lorger; Toshiki Yagi; Hiroyuki Iwamoto; Laurence Duchesne; Isabel Barasoain; Michel O Steinmetz; Denis Chrétien; Shinji Kamimura; J Fernando Díaz; Maria A Oliva
Journal:  Elife       Date:  2020-03-10       Impact factor: 8.140

5.  Effects of random hydrolysis on biofilament length distributions in a shared subunit pool.

Authors:  Sankeert Satheesan; Binayak Banerjee; Dipjyoti Das
Journal:  Biophys J       Date:  2021-12-23       Impact factor: 4.033

6.  Force-induced dynamical properties of multiple cytoskeletal filaments are distinct from that of single filaments.

Authors:  Dipjyoti Das; Dibyendu Das; Ranjith Padinhateeri
Journal:  PLoS One       Date:  2014-12-22       Impact factor: 3.240

7.  The size of the EB cap determines instantaneous microtubule stability.

Authors:  Christian Duellberg; Nicholas I Cade; David Holmes; Thomas Surrey
Journal:  Elife       Date:  2016-04-06       Impact factor: 8.140

8.  Mechanisms of kinetic stabilization by the drugs paclitaxel and vinblastine.

Authors:  Brian T Castle; Seth McCubbin; Louis S Prahl; Jordan N Bernens; David Sept; David J Odde
Journal:  Mol Biol Cell       Date:  2017-03-15       Impact factor: 4.138

9.  Signatures of a macroscopic switching transition for a dynamic microtubule.

Authors:  J S Aparna; Ranjith Padinhateeri; Dibyendu Das
Journal:  Sci Rep       Date:  2017-04-04       Impact factor: 4.379

10.  Microtubule dynamic instability: a new model with coupled GTP hydrolysis and multistep catastrophe.

Authors:  Hugo Bowne-Anderson; Marija Zanic; Monika Kauer; Jonathon Howard
Journal:  Bioessays       Date:  2013-03-27       Impact factor: 4.345

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