Literature DB >> 19289041

Nonequilibrium self-assembly of a filament coupled to ATP/GTP hydrolysis.

Padinhateeri Ranjith1, David Lacoste, Kirone Mallick, Jean-François Joanny.   

Abstract

We study the stochastic dynamics of growth and shrinkage of single actin filaments or microtubules taking into account insertion, removal, and ATP/GTP hydrolysis of subunits. The resulting phase diagram contains three different phases: two phases of unbounded growth: a rapidly growing phase and an intermediate phase, and one bounded growth phase. We analyze all these phases, with an emphasis on the bounded growth phase. We also discuss how hydrolysis affects force-velocity curves. The bounded growth phase shows features of dynamic instability, which we characterize in terms of the time needed for the ATP/GTP cap to disappear as well as the time needed for the filament to reach a length of zero (i.e., to collapse) for the first time. We obtain exact expressions for all these quantities, which we test using Monte Carlo simulations.

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Year:  2009        PMID: 19289041      PMCID: PMC2717352          DOI: 10.1016/j.bpj.2008.12.3920

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  40 in total

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9.  Theoretical study of a model for the ATP cap at the end of an actin filament.

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  15 in total

1.  Random hydrolysis controls the dynamic instability of microtubules.

Authors:  Ranjith Padinhateeri; Anatoly B Kolomeisky; David Lacoste
Journal:  Biophys J       Date:  2012-03-20       Impact factor: 4.033

2.  Role of ATP-hydrolysis in the dynamics of a single actin filament.

Authors:  Padinhateeri Ranjith; Kirone Mallick; Jean-François Joanny; David Lacoste
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

3.  A theory of microtubule catastrophes and their regulation.

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Journal:  Biophys J       Date:  2011-07-20       Impact factor: 4.033

5.  Synergy between XMAP215 and EB1 increases microtubule growth rates to physiological levels.

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Journal:  Nat Cell Biol       Date:  2013-05-12       Impact factor: 28.824

6.  A theoretical analysis of filament length fluctuations in actin and other polymers.

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Journal:  J Math Biol       Date:  2011-01-14       Impact factor: 2.259

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8.  Effects of random hydrolysis on biofilament length distributions in a shared subunit pool.

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9.  Microtubule dynamic instability: a new model with coupled GTP hydrolysis and multistep catastrophe.

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Journal:  Bioessays       Date:  2013-03-27       Impact factor: 4.345

10.  Sensor potency of the moonlighting enzyme-decorated cytoskeleton: the cytoskeleton as a metabolic sensor.

Authors:  Vic Norris; Patrick Amar; Guillaume Legent; Camille Ripoll; Michel Thellier; Judit Ovádi
Journal:  BMC Biochem       Date:  2013-02-11       Impact factor: 4.059

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