Literature DB >> 16374505

Yeast Trf5p is a nuclear poly(A) polymerase.

Jonathan Houseley1, David Tollervey.   

Abstract

Recent analyses have shown that the activity of the yeast nuclear exosome is stimulated by the Trf4p-Air1/2p-Mtr4p polyadenylation (TRAMP) complex. Here, we report that strains lacking the Rrp6p component of the nuclear exosome accumulate polyadenylated forms of many different ribosomal RNA precursors (pre-rRNAs). This polyadenylation is reduced in strains lacking either the poly(A) polymerase Trf4p or its close homologue Trf5p. In contrast, polyadenylation is enhanced by overexpression of Trf5p. Polyadenylation is also markedly increased in strains lacking the RNA helicase Mtr4p, indicating that it is required to couple poly(A) polymerase activity to degradation. Tandem affinity purification-tagged purified Trf5p showed polyadenylation activity in vitro, which was abolished by a double point mutation in the predicted catalytic site. Trf5p co-purified with Mtr4p and Air1p, indicating that it forms a complex, designated TRAMP5, that has functions that partially overlap with the TRAMP complex.

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Year:  2006        PMID: 16374505      PMCID: PMC1369253          DOI: 10.1038/sj.embor.7400612

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  20 in total

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2.  Global analysis of protein localization in budding yeast.

Authors:  Won-Ki Huh; James V Falvo; Luke C Gerke; Adam S Carroll; Russell W Howson; Jonathan S Weissman; Erin K O'Shea
Journal:  Nature       Date:  2003-10-16       Impact factor: 49.962

3.  Cid13 is a cytoplasmic poly(A) polymerase that regulates ribonucleotide reductase mRNA.

Authors:  Shigeaki Saitoh; Andrei Chabes; W Hayes McDonald; Lars Thelander; John R Yates; Paul Russell
Journal:  Cell       Date:  2002-05-31       Impact factor: 41.582

4.  Polyadenylation of rRNA in Saccharomyces cerevisiae.

Authors:  Letian Kuai; Feng Fang; J Scott Butler; Fred Sherman
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-01       Impact factor: 11.205

5.  Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs.

Authors:  A van Hoof; P Lennertz; R Parker
Journal:  Mol Cell Biol       Date:  2000-01       Impact factor: 4.272

6.  A regulatory cytoplasmic poly(A) polymerase in Caenorhabditis elegans.

Authors:  Liaoteng Wang; Christian R Eckmann; Lisa C Kadyk; Marvin Wickens; Judith Kimble
Journal:  Nature       Date:  2002-09-19       Impact factor: 49.962

7.  Mammalian GLD-2 homologs are poly(A) polymerases.

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Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-30       Impact factor: 11.205

8.  Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae.

Authors:  Sujatha Kadaba; Anna Krueger; Tamyra Trice; Annette M Krecic; Alan G Hinnebusch; James Anderson
Journal:  Genes Dev       Date:  2004-05-14       Impact factor: 11.361

9.  A yeast small nuclear RNA is required for normal processing of pre-ribosomal RNA.

Authors:  D Tollervey
Journal:  EMBO J       Date:  1987-12-20       Impact factor: 11.598

10.  A new yeast poly(A) polymerase complex involved in RNA quality control.

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Journal:  PLoS Biol       Date:  2005-04-19       Impact factor: 8.029

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  84 in total

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Authors:  Daniel L Kiss; Erik D Andrulis
Journal:  RNA       Date:  2010-11-10       Impact factor: 4.942

3.  Identification of the major spliceosomal RNAs in Dictyostelium discoideum reveals developmentally regulated U2 variants and polyadenylated snRNAs.

Authors:  Andrea Hinas; Pontus Larsson; Lotta Avesson; Leif A Kirsebom; Anders Virtanen; Fredrik Söderbom
Journal:  Eukaryot Cell       Date:  2006-06

4.  Depletion of the yeast nuclear exosome subunit Rrp6 results in accumulation of polyadenylated RNAs in a discrete domain within the nucleolus.

Authors:  Tiago Carneiro; Célia Carvalho; José Braga; José Rino; Laura Milligan; David Tollervey; Maria Carmo-Fonseca
Journal:  Mol Cell Biol       Date:  2007-04-02       Impact factor: 4.272

5.  Yeast nuclear RNA processing.

Authors:  Jade Bernstein; Eric A Toth
Journal:  World J Biol Chem       Date:  2012-01-26

Review 6.  The exosome and RNA quality control in the nucleus.

Authors:  Stepanka Vanacova; Richard Stefl
Journal:  EMBO Rep       Date:  2007-07       Impact factor: 8.807

7.  The final step in 5.8S rRNA processing is cytoplasmic in Saccharomyces cerevisiae.

Authors:  Emma Thomson; David Tollervey
Journal:  Mol Cell Biol       Date:  2009-12-14       Impact factor: 4.272

8.  Intrinsic 5'-deoxyribose-5-phosphate lyase activity in Saccharomyces cerevisiae Trf4 protein with a possible role in base excision DNA repair.

Authors:  Lionel Gellon; Dena R Carson; Jonathan P Carson; Bruce Demple
Journal:  DNA Repair (Amst)       Date:  2007-11-05

9.  Competition between the Rex1 exonuclease and the La protein affects both Trf4p-mediated RNA quality control and pre-tRNA maturation.

Authors:  Laura A Copela; Cesar F Fernandez; R Lynn Sherrer; Sandra L Wolin
Journal:  RNA       Date:  2008-05-02       Impact factor: 4.942

10.  The nuclear poly(A) polymerase and Exosome cofactor Trf5 is recruited cotranscriptionally to nucleolar surveillance.

Authors:  Maxime Wery; Sabine Ruidant; Stéphanie Schillewaert; Nathalie Leporé; Denis L J Lafontaine
Journal:  RNA       Date:  2009-01-13       Impact factor: 4.942

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