Literature DB >> 17603538

The exosome and RNA quality control in the nucleus.

Stepanka Vanacova1, Richard Stefl.   

Abstract

To control the quality of RNA biogenesis in the nucleus, cells use sophisticated molecular machines. These machines recognize and degrade not only RNA trimmings--the leftovers of RNA processing--but also incorrectly processed RNAs that contain defects. By using this mechanism, cells ensure that only high-quality RNAs are engaged in protein synthesis and other cellular processes. The exosome--a complex of several exoribonucleolytic and RNA-binding proteins--is the central 3'-end RNA degradation and processing factor in this surveillance apparatus. The exosome operates with auxiliary factors that stimulate its activity and recruit its RNA substrates in the crowded cellular environment. In this review, we discuss recent structural and functional data related to the nuclear quality-control apparatus, including the long-awaited structure of the human exosome and its activity.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17603538      PMCID: PMC1905902          DOI: 10.1038/sj.embor.7401005

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  52 in total

1.  Structural basis of 3' end RNA recognition and exoribonucleolytic cleavage by an exosome RNase PH core.

Authors:  Esben Lorentzen; Elena Conti
Journal:  Mol Cell       Date:  2005-11-11       Impact factor: 17.970

2.  Contributions of Trf4p- and Trf5p-dependent polyadenylation to the processing and degradative functions of the yeast nuclear exosome.

Authors:  Defne E Egecioglu; Anthony K Henras; Guillaume F Chanfreau
Journal:  RNA       Date:  2006-01       Impact factor: 4.942

3.  Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain.

Authors:  Søren F Midtgaard; Jannie Assenholt; Anette Thyssen Jonstrup; Lan B Van; Torben Heick Jensen; Ditlev E Brodersen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-01       Impact factor: 11.205

4.  Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts.

Authors:  Lidia Vasiljeva; Stephen Buratowski
Journal:  Mol Cell       Date:  2006-01-20       Impact factor: 17.970

5.  Nuclear RNA surveillance in Saccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA.

Authors:  Sujatha Kadaba; Xuying Wang; James T Anderson
Journal:  RNA       Date:  2006-01-23       Impact factor: 4.942

6.  Yeast Trf5p is a nuclear poly(A) polymerase.

Authors:  Jonathan Houseley; David Tollervey
Journal:  EMBO Rep       Date:  2006-02       Impact factor: 8.807

7.  Subunit architecture of multimeric complexes isolated directly from cells.

Authors:  Helena Hernández; Andrzej Dziembowski; Thomas Taverner; Bertrand Séraphin; Carol V Robinson
Journal:  EMBO Rep       Date:  2006-05-19       Impact factor: 8.807

8.  Mutant LYS2 mRNAs retained and degraded in the nucleus of Saccharomyces cerevisiae.

Authors:  Biswadip Das; Satarupa Das; Fred Sherman
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-10       Impact factor: 11.205

9.  A high-resolution map of transcription in the yeast genome.

Authors:  Lior David; Wolfgang Huber; Marina Granovskaia; Joern Toedling; Curtis J Palm; Lee Bofkin; Ted Jones; Ronald W Davis; Lars M Steinmetz
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-28       Impact factor: 11.205

10.  Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae.

Authors:  Carrie Anne Davis; Manuel Ares
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-16       Impact factor: 11.205

View more
  60 in total

1.  The human core exosome interacts with differentially localized processive RNases: hDIS3 and hDIS3L.

Authors:  Rafal Tomecki; Maiken S Kristiansen; Søren Lykke-Andersen; Aleksander Chlebowski; Katja M Larsen; Roman J Szczesny; Karolina Drazkowska; Agnieszka Pastula; Jens S Andersen; Piotr P Stepien; Andrzej Dziembowski; Torben Heick Jensen
Journal:  EMBO J       Date:  2010-06-08       Impact factor: 11.598

2.  Molecular dissection of telomeric repeat-containing RNA biogenesis unveils the presence of distinct and multiple regulatory pathways.

Authors:  Antonio Porro; Sascha Feuerhahn; Patrick Reichenbach; Joachim Lingner
Journal:  Mol Cell Biol       Date:  2010-08-16       Impact factor: 4.272

3.  Addition of poly(A) and poly(A)-rich tails during RNA degradation in the cytoplasm of human cells.

Authors:  Shimyn Slomovic; Ella Fremder; Raymond H G Staals; Ger J M Pruijn; Gadi Schuster
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-05       Impact factor: 11.205

Review 4.  The exozyme model: a continuum of functionally distinct complexes.

Authors:  Daniel L Kiss; Erik D Andrulis
Journal:  RNA       Date:  2010-11-10       Impact factor: 4.942

5.  Negative regulation of meiotic gene expression by the nuclear poly(a)-binding protein in fission yeast.

Authors:  Olivier St-André; Caroline Lemieux; Audrey Perreault; Daniel H Lackner; Jürg Bähler; François Bachand
Journal:  J Biol Chem       Date:  2010-07-09       Impact factor: 5.157

Review 6.  To polyadenylate or to deadenylate: that is the question.

Authors:  Xiaokan Zhang; Anders Virtanen; Frida E Kleiman
Journal:  Cell Cycle       Date:  2010-11-15       Impact factor: 4.534

Review 7.  The role of exosomes in the processing of proteins associated with neurodegenerative diseases.

Authors:  Laura J Vella; Robyn A Sharples; Rebecca M Nisbet; Roberto Cappai; Andrew F Hill
Journal:  Eur Biophys J       Date:  2007-12-07       Impact factor: 1.733

Review 8.  RNA-specific ribonucleotidyl transferases.

Authors:  Georges Martin; Walter Keller
Journal:  RNA       Date:  2007-09-13       Impact factor: 4.942

9.  Genome-Wide Mapping of Uncapped and Cleaved Transcripts Reveals a Role for the Nuclear mRNA Cap-Binding Complex in Cotranslational RNA Decay in Arabidopsis.

Authors:  Xiang Yu; Matthew R Willmann; Stephen J Anderson; Brian D Gregory
Journal:  Plant Cell       Date:  2016-10-07       Impact factor: 11.277

10.  Codon usage biases co-evolve with transcription termination machinery to suppress premature cleavage and polyadenylation.

Authors:  Zhipeng Zhou; Yunkun Dang; Mian Zhou; Haiyan Yuan; Yi Liu
Journal:  Elife       Date:  2018-03-16       Impact factor: 8.140

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.