Literature DB >> 20403971

Proteomic and functional analysis of the noncanonical poly(A) polymerase Cid14.

Claudia Keller1, Katrina Woolcock, Daniel Hess, Marc Bühler.   

Abstract

The fission yeast Cid14 protein belongs to a family of noncanonical poly(A) polymerases which have been implicated in a broad range of biological functions. Here we describe an extensive Cid14 protein-protein interaction network and its biochemical dissection. Cid14 most stably interacts with the zinc-knuckle protein Air1 to form the Cid14-Air1 complex (CAC). Providing a link to ribosomal RNA processing, Cid14 sediments with 60S ribosomal subunits and copurifies with 60S assembly factors. In contrast, no physical link to chromatin has been identified, although gene expression profiling revealed that efficient silencing of a few heterochromatic genes depends on Cid14 and/or Air1.

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Year:  2010        PMID: 20403971      PMCID: PMC2874164          DOI: 10.1261/rna.2053710

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  19 in total

1.  Probability-based protein identification by searching sequence databases using mass spectrometry data.

Authors:  D N Perkins; D J Pappin; D M Creasy; J S Cottrell
Journal:  Electrophoresis       Date:  1999-12       Impact factor: 3.535

2.  RNA degradation by the exosome is promoted by a nuclear polyadenylation complex.

Authors:  John LaCava; Jonathan Houseley; Cosmin Saveanu; Elisabeth Petfalski; Elizabeth Thompson; Alain Jacquier; David Tollervey
Journal:  Cell       Date:  2005-06-03       Impact factor: 41.582

3.  Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase.

Authors:  Françoise Wyers; Mathieu Rougemaille; Gwenaël Badis; Jean-Claude Rousselle; Marie-Elisabeth Dufour; Jocelyne Boulay; Béatrice Régnault; Frédéric Devaux; Abdelkader Namane; Bertrand Séraphin; Domenico Libri; Alain Jacquier
Journal:  Cell       Date:  2005-06-03       Impact factor: 41.582

4.  Yeast Trf5p is a nuclear poly(A) polymerase.

Authors:  Jonathan Houseley; David Tollervey
Journal:  EMBO Rep       Date:  2006-02       Impact factor: 8.807

Review 5.  RNA turnover and chromatin-dependent gene silencing.

Authors:  Marc Bühler
Journal:  Chromosoma       Date:  2008-11-21       Impact factor: 4.316

6.  Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome.

Authors:  Hugh P Cam; Tomoyasu Sugiyama; Ee Sin Chen; Xi Chen; Peter C FitzGerald; Shiv I S Grewal
Journal:  Nat Genet       Date:  2005-06-24       Impact factor: 38.330

7.  The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases.

Authors:  P Mitchell; E Petfalski; A Shevchenko; M Mann; D Tollervey
Journal:  Cell       Date:  1997-11-14       Impact factor: 41.582

8.  Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe.

Authors:  J Bähler; J Q Wu; M S Longtine; N G Shah; A McKenzie; A B Steever; A Wach; P Philippsen; J R Pringle
Journal:  Yeast       Date:  1998-07       Impact factor: 3.239

9.  The product of the yeast UPF1 gene is required for rapid turnover of mRNAs containing a premature translational termination codon.

Authors:  P Leeds; S W Peltz; A Jacobson; M R Culbertson
Journal:  Genes Dev       Date:  1991-12       Impact factor: 11.361

10.  A new yeast poly(A) polymerase complex involved in RNA quality control.

Authors:  Stepánka Vanácová; Jeannette Wolf; Georges Martin; Diana Blank; Sabine Dettwiler; Arno Friedlein; Hanno Langen; Gérard Keith; Walter Keller
Journal:  PLoS Biol       Date:  2005-04-19       Impact factor: 8.029

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  13 in total

Review 1.  Ski2-like RNA helicase structures: common themes and complex assemblies.

Authors:  Sean J Johnson; Ryan N Jackson
Journal:  RNA Biol       Date:  2012-09-20       Impact factor: 4.652

Review 2.  Nuclear RNA surveillance: role of TRAMP in controlling exosome specificity.

Authors:  Karyn Schmidt; J Scott Butler
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-02-15       Impact factor: 9.957

3.  Air1 zinc knuckles 4 and 5 and a conserved IWRXY motif are critical for the function and integrity of the Trf4/5-Air1/2-Mtr4 polyadenylation (TRAMP) RNA quality control complex.

Authors:  Milo B Fasken; Sara W Leung; Ayan Banerjee; Maja O Kodani; Ramiro Chavez; Elizabeth A Bowman; Meghan K Purohit; Max E Rubinson; Emily H Rubinson; Anita H Corbett
Journal:  J Biol Chem       Date:  2011-08-30       Impact factor: 5.157

4.  Widespread cotranslational formation of protein complexes.

Authors:  Caia D S Duncan; Juan Mata
Journal:  PLoS Genet       Date:  2011-12-01       Impact factor: 5.917

5.  Air2p is critical for the assembly and RNA-binding of the TRAMP complex and the KOW domain of Mtr4p is crucial for exosome activation.

Authors:  Peter Holub; Jana Lalakova; Hana Cerna; Josef Pasulka; Marie Sarazova; Kristyna Hrazdilova; Maria Sanudo Arce; Fruzsina Hobor; Richard Stefl; Stepanka Vanacova
Journal:  Nucleic Acids Res       Date:  2012-03-08       Impact factor: 16.971

6.  Activation of the TOR Signalling Pathway by Glutamine Regulates Insect Fecundity.

Authors:  Yifan Zhai; Zhongxiang Sun; Jianqing Zhang; Kui Kang; Jie Chen; Wenqing Zhang
Journal:  Sci Rep       Date:  2015-05-29       Impact factor: 4.379

7.  H3K9 methylation extends across natural boundaries of heterochromatin in the absence of an HP1 protein.

Authors:  Rieka Stunnenberg; Raghavendran Kulasegaran-Shylini; Claudia Keller; Moritz A Kirschmann; Laurent Gelman; Marc Bühler
Journal:  EMBO J       Date:  2015-10-05       Impact factor: 11.598

8.  Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex.

Authors:  Emily D Egan; Craig R Braun; Steven P Gygi; Danesh Moazed
Journal:  RNA       Date:  2014-04-08       Impact factor: 4.942

9.  The RNA exosome promotes transcription termination of backtracked RNA polymerase II.

Authors:  Jean-François Lemay; Marc Larochelle; Samuel Marguerat; Sophie Atkinson; Jürg Bähler; François Bachand
Journal:  Nat Struct Mol Biol       Date:  2014-09-21       Impact factor: 15.369

10.  The THO complex cooperates with the nuclear RNA surveillance machinery to control small nucleolar RNA expression.

Authors:  Marc Larochelle; Jean-François Lemay; François Bachand
Journal:  Nucleic Acids Res       Date:  2012-09-10       Impact factor: 16.971

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