Literature DB >> 19141608

The nuclear poly(A) polymerase and Exosome cofactor Trf5 is recruited cotranscriptionally to nucleolar surveillance.

Maxime Wery1, Sabine Ruidant, Stéphanie Schillewaert, Nathalie Leporé, Denis L J Lafontaine.   

Abstract

Terminal balls detected at the 5'-end of nascent ribosomal transcripts act as pre-rRNA processing complexes and are detected in all eukaryotes examined, resulting in illustrious Christmas tree images. Terminal balls (also known as SSU-processomes) compaction reflects the various stages of cotranscriptional ribosome assembly. Here, we have followed SSU-processome compaction in vivo by use of a chromatin immunoprecipitation (Ch-IP) approach and shown, in agreement with electron microscopy analysis of Christmas trees, that it progressively condenses to come in close proximity to the 5'-end of the 25S rRNA gene. The SSU-processome is comprised of independent autonomous building blocks that are loaded onto nascent pre-rRNAs and assemble into catalytically active pre-rRNA processing complexes in a stepwise and highly hierarchical process. Failure to assemble SSU-processome subcomplexes with proper kinetics triggers a nucleolar surveillance pathway that targets misassembled pre-rRNAs otherwise destined to mature into small subunit 18S rRNA for polyadenylation, preferentially by TRAMP5, and degradation by the 3' to 5' exoribonucleolytic activity of the Exosome. Trf5 colocalized with nascent pre-rRNPs, indicating that this nucleolar surveillance initiates cotranscriptionally.

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Year:  2009        PMID: 19141608      PMCID: PMC2657017          DOI: 10.1261/rna.1402709

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  34 in total

1.  Degradation of ribosomal RNA precursors by the exosome.

Authors:  C Allmang; P Mitchell; E Petfalski; D Tollervey
Journal:  Nucleic Acids Res       Date:  2000-04-15       Impact factor: 16.971

2.  Composition and functional characterization of yeast 66S ribosome assembly intermediates.

Authors:  P Harnpicharnchai; J Jakovljevic; E Horsey; T Miles; J Roman; M Rout; D Meagher; B Imai; Y Guo; C J Brame; J Shabanowitz; D F Hunt; J L Woolford
Journal:  Mol Cell       Date:  2001-09       Impact factor: 17.970

3.  A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis.

Authors:  François Dragon; Jennifer E G Gallagher; Patricia A Compagnone-Post; Brianna M Mitchell; Kara A Porwancher; Karen A Wehner; Steven Wormsley; Robert E Settlage; Jeffrey Shabanowitz; Yvonne Osheim; Ann L Beyer; Donald F Hunt; Susan J Baserga
Journal:  Nature       Date:  2002-06-09       Impact factor: 49.962

4.  90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors.

Authors:  Paola Grandi; Vladimir Rybin; Jochen Bassler; Elisabeth Petfalski; Daniela Strauss; Martina Marzioch; Thorsten Schäfer; Bernhard Kuster; Herbert Tschochner; David Tollervey; Anne Claude Gavin; Ed Hurt
Journal:  Mol Cell       Date:  2002-07       Impact factor: 17.970

5.  Biochemical analysis of TREX complex recruitment to intronless and intron-containing yeast genes.

Authors:  Katharine Compton Abruzzi; Scott Lacadie; Michael Rosbash
Journal:  EMBO J       Date:  2004-06-10       Impact factor: 11.598

6.  Polyadenylation of rRNA in Saccharomyces cerevisiae.

Authors:  Letian Kuai; Feng Fang; J Scott Butler; Fred Sherman
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-01       Impact factor: 11.205

7.  Transcriptional termination by RNA polymerase I requires the small subunit Rpa12p.

Authors:  Elizabeth M Prescott; Yvonne N Osheim; Hannah S Jones; Claudia M Alen; Judith G Roan; Ronald H Reeder; Ann L Beyer; Nick J Proudfoot
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-08       Impact factor: 11.205

8.  Endonucleolytic RNA cleavage by a eukaryotic exosome.

Authors:  Alice Lebreton; Rafal Tomecki; Andrzej Dziembowski; Bertrand Séraphin
Journal:  Nature       Date:  2008-12-07       Impact factor: 49.962

9.  The fifth essential DNA polymerase phi in Saccharomyces cerevisiae is localized to the nucleolus and plays an important role in synthesis of rRNA.

Authors:  Kikuo Shimizu; Yasuo Kawasaki; Shin-Ichiro Hiraga; Maki Tawaramoto; Naomi Nakashima; Akio Sugino
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-01       Impact factor: 11.205

10.  High-definition macromolecular composition of yeast RNA-processing complexes.

Authors:  Nevan J Krogan; Wen-Tao Peng; Gerard Cagney; Mark D Robinson; Robin Haw; Gouqing Zhong; Xinghua Guo; Xin Zhang; Veronica Canadien; Dawn P Richards; Bryan K Beattie; Atanas Lalev; Wen Zhang; Armaity P Davierwala; Sanie Mnaimneh; Andrei Starostine; Aaron P Tikuisis; Jorg Grigull; Nira Datta; James E Bray; Timothy R Hughes; Andrew Emili; Jack F Greenblatt
Journal:  Mol Cell       Date:  2004-01-30       Impact factor: 17.970

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  46 in total

1.  The evolutionarily conserved protein Las1 is required for pre-rRNA processing at both ends of ITS2.

Authors:  Stéphanie Schillewaert; Ludivine Wacheul; Frédéric Lhomme; Denis L J Lafontaine
Journal:  Mol Cell Biol       Date:  2011-11-14       Impact factor: 4.272

2.  Trm112 is required for Bud23-mediated methylation of the 18S rRNA at position G1575.

Authors:  Sabine Figaro; Ludivine Wacheul; Stéphanie Schillewaert; Marc Graille; Emmeline Huvelle; Rémi Mongeard; Christiane Zorbas; Denis L J Lafontaine; Valérie Heurgué-Hamard
Journal:  Mol Cell Biol       Date:  2012-04-09       Impact factor: 4.272

3.  Loss of Topoisomerase I leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis.

Authors:  Aziz El Hage; Sarah L French; Ann L Beyer; David Tollervey
Journal:  Genes Dev       Date:  2010-07-15       Impact factor: 11.361

4.  Distinguishing the roles of Topoisomerases I and II in relief of transcription-induced torsional stress in yeast rRNA genes.

Authors:  Sarah L French; Martha L Sikes; Robert D Hontz; Yvonne N Osheim; Tashima E Lambert; Aziz El Hage; Mitchell M Smith; David Tollervey; Jeffrey S Smith; Ann L Beyer
Journal:  Mol Cell Biol       Date:  2010-11-22       Impact factor: 4.272

5.  Identifying novel protein phenotype annotations by hybridizing protein-protein interactions and protein sequence similarities.

Authors:  Lei Chen; Yu-Hang Zhang; Tao Huang; Yu-Dong Cai
Journal:  Mol Genet Genomics       Date:  2016-01-04       Impact factor: 3.291

Review 6.  The multitasking polyA tail: nuclear RNA maturation, degradation and export.

Authors:  Agnieszka Tudek; Marta Lloret-Llinares; Torben Heick Jensen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-11-05       Impact factor: 6.237

7.  Yeast nuclear RNA processing.

Authors:  Jade Bernstein; Eric A Toth
Journal:  World J Biol Chem       Date:  2012-01-26

8.  The cytoplasmic mRNA degradation factor Pat1 is required for rRNA processing.

Authors:  Mridula Muppavarapu; Susanne Huch; Tracy Nissan
Journal:  RNA Biol       Date:  2016-02-26       Impact factor: 4.652

Review 9.  Powering through ribosome assembly.

Authors:  Bethany S Strunk; Katrin Karbstein
Journal:  RNA       Date:  2009-10-22       Impact factor: 4.942

10.  Amino acid signaling in yeast: post-genome duplication divergence of the Stp1 and Stp2 transcription factors.

Authors:  Kevin Wielemans; Cathy Jean; Stéphan Vissers; Bruno André
Journal:  J Biol Chem       Date:  2009-11-11       Impact factor: 5.157

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