Literature DB >> 15173578

Polyadenylation of rRNA in Saccharomyces cerevisiae.

Letian Kuai1, Feng Fang, J Scott Butler, Fred Sherman.   

Abstract

In contrast to mRNAs, rRNAs are transcribed by RNA polymerase I or III and are not believed to be polyadenylated. Here we show that in Saccharomyces cerevisiae, at least a small fraction of rRNAs do have a poly(A) tail. The levels of polyadenylated rRNAs are dramatically increased in strains lacking the degradation function of Rrp6p, a component of the nuclear exosome. Pap1p, the poly(A) polymerase, is responsible for adenylating the rRNAs despite the fact that the rRNAs do not have a canonical polyadenylation signal. Polyadenylated rRNAs reside mainly within the nucleus and are in turn degraded. For at least one rRNA type, the polyadenylation preferentially occurs on the precursor rather than the mature product. The existence of polyadenylated rRNAs may reflect a quality-control mechanism of rRNA biogenesis.

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Year:  2004        PMID: 15173578      PMCID: PMC423237          DOI: 10.1073/pnas.0402888101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

1.  RNA quality control: degradation of defective transfer RNA.

Authors:  Zhongwei Li; Stephan Reimers; Shilpa Pandit; Murray P Deutscher
Journal:  EMBO J       Date:  2002-03-01       Impact factor: 11.598

Review 2.  The yin and yang of the exosome.

Authors:  J Scott Butler
Journal:  Trends Cell Biol       Date:  2002-02       Impact factor: 20.808

Review 3.  Making ribosomes.

Authors:  Alessandro Fatica; David Tollervey
Journal:  Curr Opin Cell Biol       Date:  2002-06       Impact factor: 8.382

4.  Getting started with yeast.

Authors:  Fred Sherman
Journal:  Methods Enzymol       Date:  2002       Impact factor: 1.600

5.  A panoramic view of yeast noncoding RNA processing.

Authors:  Wen Tao Peng; Mark D Robinson; Sanie Mnaimneh; Nevan J Krogan; Gerard Cagney; Quaid Morris; Armaity P Davierwala; Jörg Grigull; Xueqi Yang; Wen Zhang; Nicholas Mitsakakis; Owen W Ryan; Nira Datta; Vladimir Jojic; Chris Pal; Veronica Canadien; Dawn Richards; Bryan Beattie; Lani F Wu; Steven J Altschuler; Sam Roweis; Brendan J Frey; Andrew Emili; Jack F Greenblatt; Timothy R Hughes
Journal:  Cell       Date:  2003-06-27       Impact factor: 41.582

Review 6.  Polyadenylation: a tail of two complexes.

Authors:  Nick Proudfoot; Justin O'Sullivan
Journal:  Curr Biol       Date:  2002-12-23       Impact factor: 10.834

7.  RNA polymerase II is an essential mRNA polyadenylation factor.

Authors:  Y Hirose; J L Manley
Journal:  Nature       Date:  1998-09-03       Impact factor: 49.962

8.  Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs.

Authors:  A van Hoof; P Lennertz; R Parker
Journal:  Mol Cell Biol       Date:  2000-01       Impact factor: 4.272

9.  Polyadenylation of ribosomal RNA by Candida albicans.

Authors:  J Fleischmann; H Liu
Journal:  Gene       Date:  2001-03-07       Impact factor: 3.688

10.  Degradation of normal mRNA in the nucleus of Saccharomyces cerevisiae.

Authors:  Biswadip Das; J Scott Butler; Fred Sherman
Journal:  Mol Cell Biol       Date:  2003-08       Impact factor: 4.272

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  83 in total

Review 1.  The exozyme model: a continuum of functionally distinct complexes.

Authors:  Daniel L Kiss; Erik D Andrulis
Journal:  RNA       Date:  2010-11-10       Impact factor: 4.942

Review 2.  Eukaryotic 5S rRNA biogenesis.

Authors:  Martin Ciganda; Noreen Williams
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-02-25       Impact factor: 9.957

3.  Identification of the major spliceosomal RNAs in Dictyostelium discoideum reveals developmentally regulated U2 variants and polyadenylated snRNAs.

Authors:  Andrea Hinas; Pontus Larsson; Lotta Avesson; Leif A Kirsebom; Anders Virtanen; Fredrik Söderbom
Journal:  Eukaryot Cell       Date:  2006-06

4.  Genome-wide mRNA surveillance is coupled to mRNA export.

Authors:  Haley Hieronymus; Michael C Yu; Pamela A Silver
Journal:  Genes Dev       Date:  2004-10-15       Impact factor: 11.361

5.  Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain.

Authors:  Søren F Midtgaard; Jannie Assenholt; Anette Thyssen Jonstrup; Lan B Van; Torben Heick Jensen; Ditlev E Brodersen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-01       Impact factor: 11.205

6.  Nuclear RNA surveillance in Saccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA.

Authors:  Sujatha Kadaba; Xuying Wang; James T Anderson
Journal:  RNA       Date:  2006-01-23       Impact factor: 4.942

7.  A novel plasmid-based microarray screen identifies suppressors of rrp6Delta in Saccharomyces cerevisiae.

Authors:  Katharine Abruzzi; Sylvia Denome; Jens Raabjerg Olsen; Jannie Assenholt; Line Lindegaard Haaning; Torben Heick Jensen; Michael Rosbash
Journal:  Mol Cell Biol       Date:  2006-11-13       Impact factor: 4.272

8.  5-fluorouracil enhances exosome-dependent accumulation of polyadenylated rRNAs.

Authors:  Feng Fang; Jason Hoskins; J Scott Butler
Journal:  Mol Cell Biol       Date:  2004-12       Impact factor: 4.272

9.  Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays.

Authors:  Viktor Stolc; Manoj Pratim Samanta; Waraporn Tongprasit; Himanshu Sethi; Shoudan Liang; David C Nelson; Adrian Hegeman; Clark Nelson; David Rancour; Sebastian Bednarek; Eldon L Ulrich; Qin Zhao; Russell L Wrobel; Craig S Newman; Brian G Fox; George N Phillips; John L Markley; Michael R Sussman
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-08       Impact factor: 11.205

10.  The nuclear poly(A) polymerase and Exosome cofactor Trf5 is recruited cotranscriptionally to nucleolar surveillance.

Authors:  Maxime Wery; Sabine Ruidant; Stéphanie Schillewaert; Nathalie Leporé; Denis L J Lafontaine
Journal:  RNA       Date:  2009-01-13       Impact factor: 4.942

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