Literature DB >> 16341259

Teaching systems biology: an active-learning approach.

Anuj Kumar1.   

Abstract

With genomics well established in modern molecular biology, recent studies have sought to further the discipline by integrating complementary methodologies into a holistic depiction of the molecular mechanisms underpinning cell function. This genomic subdiscipline, loosely termed "systems biology," presents the biology educator with both opportunities and obstacles: The benefit of exposing students to this cutting-edge scientific methodology is manifest, yet how does one convey the breadth and advantage of systems biology while still engaging the student? Here, I describe an active-learning approach to the presentation of systems biology. In graduate classes at the University of Michigan, Ann Arbor, I divided students into small groups and asked each group to interpret a sample data set (e.g., microarray data, two-hybrid data, homology-search results) describing a hypothetical signaling pathway. Mimicking realistic experimental results, each data set revealed a portion of this pathway; however, students were only able to reconstruct the full pathway by integrating all data sets, thereby exemplifying the utility in a systems biology approach. Student response to this cooperative exercise was extremely positive. In total, this approach provides an effective introduction to systems biology appropriate for students at both the undergraduate and graduate levels.

Mesh:

Year:  2005        PMID: 16341259      PMCID: PMC1305894          DOI: 10.1187/cbe.04-12-0057

Source DB:  PubMed          Journal:  Cell Biol Educ        ISSN: 1536-7509


  17 in total

Review 1.  Systems biology: a brief overview.

Authors:  Hiroaki Kitano
Journal:  Science       Date:  2002-03-01       Impact factor: 47.728

2.  Genome-wide RNAi analysis of growth and viability in Drosophila cells.

Authors:  Michael Boutros; Amy A Kiger; Susan Armknecht; Kim Kerr; Marc Hild; Britta Koch; Stefan A Haas; Renato Paro; Norbert Perrimon
Journal:  Science       Date:  2004-02-06       Impact factor: 47.728

3.  Public access for teaching genomics, proteomics, and bioinformatics.

Authors:  A Malcolm Campbell
Journal:  Cell Biol Educ       Date:  2003

4.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

Review 5.  Archaeal genomics: an overview.

Authors:  G J Olsen; C R Woese
Journal:  Cell       Date:  1997-06-27       Impact factor: 41.582

6.  Big time for small genomes.

Authors:  E V Koonin
Journal:  Genome Res       Date:  1997-05       Impact factor: 9.043

Review 7.  Genome-wide mutant collections: toolboxes for functional genomics.

Authors:  P S Coelho; A Kumar; M Snyder
Journal:  Curr Opin Microbiol       Date:  2000-06       Impact factor: 7.934

8.  Quantitative monitoring of gene expression patterns with a complementary DNA microarray.

Authors:  M Schena; D Shalon; R W Davis; P O Brown
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

9.  Finishing the euchromatic sequence of the human genome.

Authors: 
Journal:  Nature       Date:  2004-10-21       Impact factor: 49.962

Review 10.  Emerging technologies in yeast genomics.

Authors:  A Kumar; M Snyder
Journal:  Nat Rev Genet       Date:  2001-04       Impact factor: 53.242

View more
  10 in total

1.  Genome Consortium for Active Teaching: meeting the goals of BIO2010.

Authors:  A Malcolm Campbell; Mary Lee S Ledbetter; Laura L M Hoopes; Todd T Eckdahl; Laurie J Heyer; Anne Rosenwald; Edison Fowlks; Scott Tonidandel; Brooke Bucholtz; Gail Gottfried
Journal:  CBE Life Sci Educ       Date:  2007       Impact factor: 3.325

2.  Teaching synthetic biology, bioinformatics and engineering to undergraduates: the interdisciplinary Build-a-Genome course.

Authors:  Jessica S Dymond; Lisa Z Scheifele; Sarah Richardson; Pablo Lee; Srinivasan Chandrasegaran; Joel S Bader; Jef D Boeke
Journal:  Genetics       Date:  2008-11-17       Impact factor: 4.562

3.  Make microarray data with known ratios.

Authors:  A Malcolm Campbell; William T Hatfield; Laurie J Heyer
Journal:  CBE Life Sci Educ       Date:  2007       Impact factor: 3.325

4.  Using Interactive Data Visualizations for Exploratory Analysis in Undergraduate Genomics Coursework: Field Study Findings and Guidelines.

Authors:  Barbara Mirel; Anuj Kumar; Paige Nong; Gang Su; Fan Meng
Journal:  J Sci Educ Technol       Date:  2015-09-04       Impact factor: 2.315

5.  A Bioinformatics Module for Use in an Introductory Biology Laboratory.

Authors:  Adrienne Alaie; Virginia Teller; Wei-Gang Qiu
Journal:  Am Biol Teach       Date:  2012-05       Impact factor: 0.342

6.  Dissecting the Molecular and Neural Circuit Bases of Behavior as an Introduction to Discovery-Driven Research; A Report on a Course-Based Undergraduate Research Experience.

Authors:  Nathaniel J Himmel; Jamin M Letcher; Daniel N Cox
Journal:  J Undergrad Neurosci Educ       Date:  2020-12-31

7.  Bioinformatics in Africa: The Rise of Ghana?

Authors:  Thomas K Karikari
Journal:  PLoS Comput Biol       Date:  2015-09-17       Impact factor: 4.475

8.  How Do You Like Your Science, Wet or Dry? How Two Lab Experiences Influence Student Understanding of Science Concepts and Perceptions of Authentic Scientific Practice.

Authors:  Maureen Munn; Randy Knuth; Katie Van Horne; Andrew W Shouse; Sheldon Levias
Journal:  CBE Life Sci Educ       Date:  2017       Impact factor: 3.325

9.  Strategies for structuring interdisciplinary education in Systems Biology: an European perspective.

Authors:  Marija Cvijovic; Thomas Höfer; Jure Aćimović; Lilia Alberghina; Eivind Almaas; Daniela Besozzi; Anders Blomberg; Till Bretschneider; Marta Cascante; Olivier Collin; Pedro de Atauri; Cornelia Depner; Robert Dickinson; Maciej Dobrzynski; Christian Fleck; Jordi Garcia-Ojalvo; Didier Gonze; Jens Hahn; Heide Marie Hess; Susanne Hollmann; Marcus Krantz; Ursula Kummer; Torbjörn Lundh; Gifta Martial; Vítor Martins Dos Santos; Angela Mauer-Oberthür; Babette Regierer; Barbara Skene; Egils Stalidzans; Jörg Stelling; Bas Teusink; Christopher T Workman; Stefan Hohmann
Journal:  NPJ Syst Biol Appl       Date:  2016-05-26

10.  Using the jigsaw technique to teach patient safety.

Authors:  Nirvani Goolsarran; Carine E Hamo; Wei-Hsin Lu
Journal:  Med Educ Online       Date:  2020-12
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.