Literature DB >> 12888845

Public access for teaching genomics, proteomics, and bioinformatics.

A Malcolm Campbell1.   

Abstract

When the human genome project was conceived, its leaders wanted all researchers to have equal access to the data and associated research tools. Their vision of equal access provides an unprecedented teaching opportunity. Teachers and students have free access to the same databases that researchers are using. Furthermore, the recent movement to deliver scientific publications freely has presented a second source of current information for teaching. I have developed a genomics course that incorporates many of the public-domain databases, research tools, and peer-reviewed journals. These online resources provide students with exciting entree into the new fields of genomics, proteomics, and bioinformatics. In this essay, I outline how these fields are especially well suited for inclusion in the undergraduate curriculum. Assessment data indicate that my students were able to utilize online information to achieve the educational goals of the course and that the experience positively influenced their perceptions of how they might contribute to biology.

Entities:  

Mesh:

Year:  2003        PMID: 12888845      PMCID: PMC162192          DOI: 10.1187/cbe.03-02-0007

Source DB:  PubMed          Journal:  Cell Biol Educ        ISSN: 1536-7509


  9 in total

1.  An annotated catalog of inverted repeats of Caenorhabditis elegans chromosomes III and X, with observations concerning odd/even biases and conserved motifs.

Authors:  M D LeBlanc; G Aspeslagh; N P Buggia; B D Dyer
Journal:  Genome Res       Date:  2000-09       Impact factor: 9.043

2.  Meeting report: Incorporating genomics research into undergraduate curricula.

Authors:  Betsey Dexter Dyer; Mark D LeBlanc
Journal:  Cell Biol Educ       Date:  2002

3.  Assessing student learning.

Authors:  Marshall D Sundberg
Journal:  Cell Biol Educ       Date:  2002

4.  Genesis of biochemistry: a problems approach.

Authors:  William B Wood
Journal:  Cell Biol Educ       Date:  2002

5.  Approaches to cell biology teaching: questions about questions.

Authors:  Deborah Allen; Kimberly Tanner
Journal:  Cell Biol Educ       Date:  2002

6.  Large clusters of co-expressed genes in the Drosophila genome.

Authors:  Alexander M Boutanaev; Alla I Kalmykova; Yuri Y Shevelyov; Dmitry I Nurminsky
Journal:  Nature       Date:  2002-12-12       Impact factor: 49.962

7.  Rebalancing teaching and research.

Authors:  Thomas R Cech
Journal:  Science       Date:  2003-01-10       Impact factor: 47.728

8.  Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii.

Authors:  Jane M Carlton; Samuel V Angiuoli; Bernard B Suh; Taco W Kooij; Mihaela Pertea; Joana C Silva; Maria D Ermolaeva; Jonathan E Allen; Jeremy D Selengut; Hean L Koo; Jeremy D Peterson; Mihai Pop; Daniel S Kosack; Martin F Shumway; Shelby L Bidwell; Shamira J Shallom; Susan E van Aken; Steven B Riedmuller; Tamara V Feldblyum; Jennifer K Cho; John Quackenbush; Martha Sedegah; Azadeh Shoaibi; Leda M Cummings; Laurence Florens; John R Yates; J Dale Raine; Robert E Sinden; Michael A Harris; Deirdre A Cunningham; Peter R Preiser; Lawrence W Bergman; Akhil B Vaidya; Leo H van Lin; Chris J Janse; Andrew P Waters; Hamilton O Smith; Owen R White; Steven L Salzberg; J Craig Venter; Claire M Fraser; Stephen L Hoffman; Malcolm J Gardner; Daniel J Carucci
Journal:  Nature       Date:  2002-10-03       Impact factor: 49.962

9.  Gene expression during the life cycle of Drosophila melanogaster.

Authors:  Michelle N Arbeitman; Eileen E M Furlong; Farhad Imam; Eric Johnson; Brian H Null; Bruce S Baker; Mark A Krasnow; Matthew P Scott; Ronald W Davis; Kevin P White
Journal:  Science       Date:  2002-09-27       Impact factor: 47.728

  9 in total
  18 in total

1.  Applying instructional design theories to bioinformatics education in microarray analysis and primer design workshops.

Authors:  Aviv Shachak; Ron Ophir; Eitan Rubin
Journal:  Cell Biol Educ       Date:  2005

2.  Teaching systems biology: an active-learning approach.

Authors:  Anuj Kumar
Journal:  Cell Biol Educ       Date:  2005

3.  Genome science: a video tour of the Washington University Genome Sequencing Center for high school and undergraduate students.

Authors:  Susan K Flowers; Carla Easter; Andrea Holmes; Brian Cohen; April E Bednarski; Elaine R Mardis; Richard K Wilson; Sarah C R Elgin
Journal:  Cell Biol Educ       Date:  2005

4.  Broad issues to consider for library involvement in bioinformatics.

Authors:  Renata C Geer
Journal:  J Med Libr Assoc       Date:  2006-07

5.  Incorporating a new bioinformatics component into genetics at a historically black college: outcomes and lessons.

Authors:  J David Holtzclaw; Arri Eisen; Erika M Whitney; Meera Penumetcha; J Joseph Hoey; K Sean Kimbro
Journal:  CBE Life Sci Educ       Date:  2006       Impact factor: 3.325

6.  How golden is silence? Teaching undergraduates the power and limits of RNA interference.

Authors:  Natalie H Kuldell
Journal:  CBE Life Sci Educ       Date:  2006       Impact factor: 3.325

7.  Whole genome sequencing in the undergraduate classroom: outcomes and lessons from a pilot course.

Authors:  Jennifer C Drew; Eric W Triplett
Journal:  J Microbiol Biol Educ       Date:  2008-12-17

8.  DNA microarrays in the undergraduate microbiology lab: experimentation and handling large datasets in as few as six weeks.

Authors:  David B Kushner
Journal:  J Microbiol Biol Educ       Date:  2009-12-17

9.  A Bioinformatics Module for Use in an Introductory Biology Laboratory.

Authors:  Adrienne Alaie; Virginia Teller; Wei-Gang Qiu
Journal:  Am Biol Teach       Date:  2012-05       Impact factor: 0.342

10.  An inquiry into protein structure and genetic disease: introducing undergraduates to bioinformatics in a large introductory course.

Authors:  April E Bednarski; Sarah C R Elgin; Himadri B Pakrasi
Journal:  Cell Biol Educ       Date:  2005
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