Literature DB >> 14764878

Genome-wide RNAi analysis of growth and viability in Drosophila cells.

Michael Boutros1, Amy A Kiger, Susan Armknecht, Kim Kerr, Marc Hild, Britta Koch, Stefan A Haas, Renato Paro, Norbert Perrimon.   

Abstract

A crucial aim upon completion of whole genome sequences is the functional analysis of all predicted genes. We have applied a high-throughput RNA-interference (RNAi) screen of 19,470 double-stranded (ds) RNAs in cultured cells to characterize the function of nearly all (91%) predicted Drosophila genes in cell growth and viability. We found 438 dsRNAs that identified essential genes, among which 80% lacked mutant alleles. A quantitative assay of cell number was applied to identify genes of known and uncharacterized functions. In particular, we demonstrate a role for the homolog of a mammalian acute myeloid leukemia gene (AML1) in cell survival. Such a systematic screen for cell phenotypes, such as cell viability, can thus be effective in characterizing functionally related genes on a genome-wide scale.

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Year:  2004        PMID: 14764878     DOI: 10.1126/science.1091266

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  276 in total

Review 1.  RUNX1-dependent mechanisms in biological control and dysregulation in cancer.

Authors:  Deli Hong; Andrew J Fritz; Jonathan A Gordon; Coralee E Tye; Joseph R Boyd; Kirsten M Tracy; Seth E Frietze; Frances E Carr; Jeffrey A Nickerson; Andre J Van Wijnen; Anthony N Imbalzano; Sayyed K Zaidi; Jane B Lian; Janet L Stein; Gary S Stein
Journal:  J Cell Physiol       Date:  2018-12-04       Impact factor: 6.384

2.  DEQOR: a web-based tool for the design and quality control of siRNAs.

Authors:  Andreas Henschel; Frank Buchholz; Bianca Habermann
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

3.  Effectors of alcohol-induced cell killing in Drosophila.

Authors:  P Chen; X Tu; F Akdemir; S K Chew; A Rothenfluh; J M Abrams
Journal:  Cell Death Differ       Date:  2012-04-27       Impact factor: 15.828

4.  Dissecting the biological role of mucin-type O-glycosylation using RNA interference in Drosophila cell culture.

Authors:  Liping Zhang; Kelly G Ten Hagen
Journal:  J Biol Chem       Date:  2010-08-31       Impact factor: 5.157

5.  Proteomic and functional analysis of the mitotic Drosophila centrosome.

Authors:  Hannah Müller; David Schmidt; Sandra Steinbrink; Ekaterina Mirgorodskaya; Verena Lehmann; Karin Habermann; Felix Dreher; Niklas Gustavsson; Thomas Kessler; Hans Lehrach; Ralf Herwig; Johan Gobom; Aspasia Ploubidou; Michael Boutros; Bodo M H Lange
Journal:  EMBO J       Date:  2010-09-03       Impact factor: 11.598

6.  The FLIGHT Drosophila RNAi database: 2010 update.

Authors:  David Sims; Borisas Bursteinas; Ekta Jain; Qiong Gao; Buzz Baum; Marketa Zvelebil
Journal:  Fly (Austin)       Date:  2010-10-01       Impact factor: 2.160

Review 7.  In vivo RNAi: today and tomorrow.

Authors:  Norbert Perrimon; Jian-Quan Ni; Lizabeth Perkins
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-06-09       Impact factor: 10.005

8.  Electrochemical cues regulate assembly of the Frizzled/Dishevelled complex at the plasma membrane during planar epithelial polarization.

Authors:  Matias Simons; William J Gault; Daniel Gotthardt; Rajeev Rohatgi; Thomas J Klein; Youming Shao; Ho-Jin Lee; Ai-Luen Wu; Yimin Fang; Lisa M Satlin; Julian T Dow; Jie Chen; Jie Zheng; Michael Boutros; Marek Mlodzik
Journal:  Nat Cell Biol       Date:  2009-02-22       Impact factor: 28.824

9.  Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library.

Authors:  Jean-François Rual; Julian Ceron; John Koreth; Tong Hao; Anne-Sophie Nicot; Tomoko Hirozane-Kishikawa; Jean Vandenhaute; Stuart H Orkin; David E Hill; Sander van den Heuvel; Marc Vidal
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

10.  Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex.

Authors:  Silvana Konermann; Mark D Brigham; Alexandro E Trevino; Julia Joung; Omar O Abudayyeh; Clea Barcena; Patrick D Hsu; Naomi Habib; Jonathan S Gootenberg; Hiroshi Nishimasu; Osamu Nureki; Feng Zhang
Journal:  Nature       Date:  2014-12-10       Impact factor: 49.962

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