Literature DB >> 26877625

Using Interactive Data Visualizations for Exploratory Analysis in Undergraduate Genomics Coursework: Field Study Findings and Guidelines.

Barbara Mirel1, Anuj Kumar2, Paige Nong3, Gang Su4, Fan Meng4.   

Abstract

Life scientists increasingly use visual analytics to explore large data sets and generate hypotheses. Undergraduate biology majors should be learning these same methods. Yet visual analytics is one of the most underdeveloped areas of undergraduate biology education. This study sought to determine the feasibility of undergraduate biology majors conducting exploratory analysis using the same interactive data visualizations as practicing scientists. We examined 22 upper level undergraduates in a genomics course as they engaged in a case-based inquiry with an interactive heat map. We qualitatively and quantitatively analyzed students' visual analytic behaviors, reasoning and outcomes to identify student performance patterns, commonly shared efficiencies and task completion. We analyzed students' successes and difficulties in applying knowledge and skills relevant to the visual analytics case and related gaps in knowledge and skill to associated tool designs. Findings show that undergraduate engagement in visual analytics is feasible and could be further strengthened through tool usability improvements. We identify these improvements. We speculate, as well, on instructional considerations that our findings suggested may also enhance visual analytics in case-based modules.

Entities:  

Keywords:  Case-based instruction; College biology; Critical thinking; Data visualization; Technology; Visual analytics

Year:  2015        PMID: 26877625      PMCID: PMC4750641          DOI: 10.1007/s10956-015-9579-z

Source DB:  PubMed          Journal:  J Sci Educ Technol        ISSN: 1059-0145            Impact factor:   2.315


  16 in total

1.  Functional discovery via a compendium of expression profiles.

Authors:  T R Hughes; M J Marton; A R Jones; C J Roberts; R Stoughton; C D Armour; H A Bennett; E Coffey; H Dai; Y D He; M J Kidd; A M King; M R Meyer; D Slade; P Y Lum; S B Stepaniants; D D Shoemaker; D Gachotte; K Chakraburtty; J Simon; M Bard; S H Friend
Journal:  Cell       Date:  2000-07-07       Impact factor: 41.582

2.  Using graph-based assessments within socratic tutorials to reveal and refine students' analytical thinking about molecular networks.

Authors:  Caleb Trujillo; Melanie M Cooper; Michael W Klymkowsky
Journal:  Biochem Mol Biol Educ       Date:  2012-02-28       Impact factor: 1.160

3.  An insight-based methodology for evaluating bioinformatics visualizations.

Authors:  Purvi Saraiya; Chris North; Karen Duca
Journal:  IEEE Trans Vis Comput Graph       Date:  2005 Jul-Aug       Impact factor: 4.579

4.  NIH-NSF Visualization Research Challenges report summary.

Authors:  Tamara Munzner; Chris Johnson; Robert Moorhead; Hanspeter Pfister; Penny Rheingans; Terry S Yoo
Journal:  IEEE Comput Graph Appl       Date:  2006 Mar-Apr       Impact factor: 2.088

5.  Biology in bloom: implementing Bloom's Taxonomy to enhance student learning in biology.

Authors:  Alison Crowe; Clarissa Dirks; Mary Pat Wenderoth
Journal:  CBE Life Sci Educ       Date:  2008       Impact factor: 3.325

6.  Two items remembered as precisely as one: how integral features can improve visual working memory.

Authors:  Gi Yeul Bae; Jonathan I Flombaum
Journal:  Psychol Sci       Date:  2013-08-12

Review 7.  Visualization of omics data for systems biology.

Authors:  Nils Gehlenborg; Seán I O'Donoghue; Nitin S Baliga; Alexander Goesmann; Matthew A Hibbs; Hiroaki Kitano; Oliver Kohlbacher; Heiko Neuweger; Reinhard Schneider; Dan Tenenbaum; Anne-Claude Gavin
Journal:  Nat Methods       Date:  2010-03       Impact factor: 28.547

8.  Obligatory encoding of task-irrelevant features depletes working memory resources.

Authors:  Louise Marshall; Paul M Bays
Journal:  J Vis       Date:  2013-02-18       Impact factor: 2.240

9.  Teaching biology through statistics: application of statistical methods in genetics and zoology courses.

Authors:  Migdalisel Colon-Berlingeri; Patricia A Burrowes
Journal:  CBE Life Sci Educ       Date:  2011       Impact factor: 3.325

10.  Questions for assessing higher-order cognitive skills: it's not just Bloom's.

Authors:  Paula P Lemons; J Derrick Lemons
Journal:  CBE Life Sci Educ       Date:  2013       Impact factor: 3.325

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  1 in total

1.  Improving Debt Literacy by 2/3 Through Four Simple Infographics Requires Numeracy and Not Focusing on Negatives of Debt.

Authors:  Robert Porzak; Andrzej Cwynar; Wiktor Cwynar
Journal:  Front Psychol       Date:  2021-03-26
  1 in total

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