Literature DB >> 15899842

Trm11p and Trm112p are both required for the formation of 2-methylguanosine at position 10 in yeast tRNA.

Suresh K Purushothaman1, Janusz M Bujnicki, Henri Grosjean, Bruno Lapeyre.   

Abstract

N(2)-Monomethylguanosine-10 (m(2)G10) and N(2),N(2)-dimethylguanosine-26 (m(2)(2)G26) are the only two guanosine modifications that have been detected in tRNA from nearly all archaea and eukaryotes but not in bacteria. In Saccharomyces cerevisiae, formation of m(2)(2)G26 is catalyzed by Trm1p, and we report here the identification of the enzymatic activity that catalyzes the formation of m(2)G10 in yeast tRNA. It is composed of at least two subunits that are associated in vivo: Trm11p (Yol124c), which is the catalytic subunit, and Trm112p (Ynr046w), a putative zinc-binding protein. While deletion of TRM11 has no detectable phenotype under laboratory conditions, deletion of TRM112 leads to a severe growth defect, suggesting that it has additional functions in the cell. Indeed, Trm112p is associated with at least four proteins: two tRNA methyltransferases (Trm9p and Trm11p), one putative protein methyltransferase (Mtc6p/Ydr140w), and one protein with a Rossmann fold dehydrogenase domain (Lys9p/Ynr050c). In addition, TRM11 interacts genetically with TRM1, thus suggesting that the absence of m(2)G10 and m(2)(2)G26 affects tRNA metabolism or functioning.

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Year:  2005        PMID: 15899842      PMCID: PMC1140639          DOI: 10.1128/MCB.25.11.4359-4370.2005

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  58 in total

1.  THUMP--a predicted RNA-binding domain shared by 4-thiouridine, pseudouridine synthases and RNA methylases.

Authors:  L Aravind; E V Koonin
Journal:  Trends Biochem Sci       Date:  2001-04       Impact factor: 13.807

2.  A primordial tRNA modification required for the evolution of life?

Authors:  G R Björk; K Jacobsson; K Nilsson; M J Johansson; A S Byström; O P Persson
Journal:  EMBO J       Date:  2001-01-15       Impact factor: 11.598

3.  Sequence analysis and structure prediction of 23S rRNA:m1G methyltransferases reveals a conserved core augmented with a putative Zn-binding domain in the N-terminus and family-specific elaborations in the C-terminus.

Authors:  Janusz M Bujnicki; Robert M Blumenthal; Leszek Rychlewski
Journal:  J Mol Microbiol Biotechnol       Date:  2002-01

4.  Detection and quantification of modified nucleotides in RNA using thin-layer chromatography.

Authors:  Henri Grosjean; Gérard Keith; Louis Droogmans
Journal:  Methods Mol Biol       Date:  2004

5.  Functional organization of the yeast proteome by systematic analysis of protein complexes.

Authors:  Anne-Claude Gavin; Markus Bösche; Roland Krause; Paola Grandi; Martina Marzioch; Andreas Bauer; Jörg Schultz; Jens M Rick; Anne-Marie Michon; Cristina-Maria Cruciat; Marita Remor; Christian Höfert; Malgorzata Schelder; Miro Brajenovic; Heinz Ruffner; Alejandro Merino; Karin Klein; Manuela Hudak; David Dickson; Tatjana Rudi; Volker Gnau; Angela Bauch; Sonja Bastuck; Bettina Huhse; Christina Leutwein; Marie-Anne Heurtier; Richard R Copley; Angela Edelmann; Erich Querfurth; Vladimir Rybin; Gerard Drewes; Manfred Raida; Tewis Bouwmeester; Peer Bork; Bertrand Seraphin; Bernhard Kuster; Gitte Neubauer; Giulio Superti-Furga
Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

6.  HemK, a class of protein methyl transferase with similarity to DNA methyl transferases, methylates polypeptide chain release factors, and hemK knockout induces defects in translational termination.

Authors:  Kenji Nakahigashi; Naoko Kubo; Shin-ichiro Narita; Takeshi Shimaoka; Simon Goto; Taku Oshima; Hirotada Mori; Maki Maeda; Chieko Wada; Hachiro Inokuchi
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-22       Impact factor: 11.205

7.  The hemK gene in Escherichia coli encodes the N(5)-glutamine methyltransferase that modifies peptide release factors.

Authors:  Valérie Heurgué-Hamard; Stéphanie Champ; Ake Engström; Måns Ehrenberg; Richard H Buckingham
Journal:  EMBO J       Date:  2002-02-15       Impact factor: 11.598

8.  Spb1p is a yeast nucleolar protein associated with Nop1p and Nop58p that is able to bind S-adenosyl-L-methionine in vitro.

Authors:  L Pintard; D Kressler; B Lapeyre
Journal:  Mol Cell Biol       Date:  2000-02       Impact factor: 4.272

9.  Trm7p catalyses the formation of two 2'-O-methylriboses in yeast tRNA anticodon loop.

Authors:  Lionel Pintard; François Lecointe; Janusz M Bujnicki; Claire Bonnerot; Henri Grosjean; Bruno Lapeyre
Journal:  EMBO J       Date:  2002-04-02       Impact factor: 11.598

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  60 in total

1.  Trm112 is required for Bud23-mediated methylation of the 18S rRNA at position G1575.

Authors:  Sabine Figaro; Ludivine Wacheul; Stéphanie Schillewaert; Marc Graille; Emmeline Huvelle; Rémi Mongeard; Christiane Zorbas; Denis L J Lafontaine; Valérie Heurgué-Hamard
Journal:  Mol Cell Biol       Date:  2012-04-09       Impact factor: 4.272

Review 2.  tRNA biology charges to the front.

Authors:  Eric M Phizicky; Anita K Hopper
Journal:  Genes Dev       Date:  2010-09-01       Impact factor: 11.361

3.  A survey of essential gene function in the yeast cell division cycle.

Authors:  Lisa Yu; Lourdes Peña Castillo; Sanie Mnaimneh; Timothy R Hughes; Grant W Brown
Journal:  Mol Biol Cell       Date:  2006-08-30       Impact factor: 4.138

Review 4.  Identification of genes encoding tRNA modification enzymes by comparative genomics.

Authors:  Valérie de Crécy-Lagard
Journal:  Methods Enzymol       Date:  2007       Impact factor: 1.600

Review 5.  Diversity in mechanism and function of tRNA methyltransferases.

Authors:  William E Swinehart; Jane E Jackman
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

6.  Distinct Modified Nucleosides in tRNATrp from the Hyperthermophilic Archaeon Thermococcus kodakarensis and Requirement of tRNA m2G10/m2 2G10 Methyltransferase (Archaeal Trm11) for Survival at High Temperatures.

Authors:  Akira Hirata; Takeo Suzuki; Tomoko Nagano; Daishiro Fujii; Mizuki Okamoto; Manaka Sora; Todd M Lowe; Tamotsu Kanai; Haruyuki Atomi; Tsutomu Suzuki; Hiroyuki Hori
Journal:  J Bacteriol       Date:  2019-10-04       Impact factor: 3.490

7.  The La protein functions redundantly with tRNA modification enzymes to ensure tRNA structural stability.

Authors:  Laura A Copela; Ghadiyaram Chakshusmathi; R Lynn Sherrer; Sandra L Wolin
Journal:  RNA       Date:  2006-04       Impact factor: 4.942

8.  Structural and functional studies of Bud23-Trm112 reveal 18S rRNA N7-G1575 methylation occurs on late 40S precursor ribosomes.

Authors:  Juliette Létoquart; Emmeline Huvelle; Ludivine Wacheul; Gabrielle Bourgeois; Christiane Zorbas; Marc Graille; Valérie Heurgué-Hamard; Denis L J Lafontaine
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-08       Impact factor: 11.205

Review 9.  Do all modifications benefit all tRNAs?

Authors:  Eric M Phizicky; Juan D Alfonzo
Journal:  FEBS Lett       Date:  2010-01-21       Impact factor: 4.124

10.  In Silico screening for functional candidates amongst hypothetical proteins.

Authors:  Claus Desler; Prashanth Suravajhala; May Sanderhoff; Merete Rasmussen; Lene Juel Rasmussen
Journal:  BMC Bioinformatics       Date:  2009-09-16       Impact factor: 3.169

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